Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0394 ATGGATGGAAGTTGGGGTGAAGGAAAGAGAATCTATGAGTACAGAGAAGAAAATGAGTATGAAGTAGAAGTAGAAATAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGAGAAAAGGAAAAGGGTGGTGACTGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCTTGCCAAGTTGATAACTGTAATGCTGATCTAAGTGCTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAGTGCATCCGAATATCACTGA 432 0.4097 MDGSWGEGKRIYEYREENEYEVEVEIEEEEDVSYGDDEKRKRVVTDHLYNKKGSKAGGSVTPSCQVDNCNADLSAAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHEVSEFDDLKRSCRRRLAGHNERRRKSASEYH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0394 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 141 IPR044817 GO:0003677
Mtr2g0394 143 ProSiteProfiles Zinc finger SBP-type profile. 61 138 IPR004333 GO:0003677
Mtr2g0394 143 Gene3D - 54 125 IPR036893 GO:0003677|GO:0005634
Mtr2g0394 143 SUPERFAMILY SBT domain 62 141 IPR036893 GO:0003677|GO:0005634
Mtr2g0394 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 17 141 - -
Mtr2g0394 143 PIRSF SBP 6 143 IPR017238 GO:0003677|GO:0003700|GO:0009908
Mtr2g0394 143 Pfam SBP domain 64 137 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0394 Mtr-Chr2 3983370 3986318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0394 43 141 SBP-box Gene Family AT1G53160 62.626 3.67e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr2g0394 SBP 9.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0394 - - gmx:100782285 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0394 2 3983370 3986318 Mtr2g0394 2 3983370 3986318 ECH
Mtr2g0394 2 3983370 3986318 Mtr4g2941 4 43117075 43121647 ECH
Mtr2g2608 2 39079252 39082199 Mtr2g0394 2 3983370 3986318 ECH
Mtr4g2941 4 43117075 43121647 Mtr2g0394 2 3983370 3986318 PCT