Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0372 ATGGCATTTGAGGATTGTTTTTCCCATGAATTGAAAACCATTCCAAATTCCATGTCAGAAGCAGAAGAATCCAATGGTTTTGATTGTAACATCTGCTTAGACTTCGCCAACGAACCGGTAGTCACCCTTTGTGGCCACCTTTACTGCTGGCCTTGCATCTACAAGTGGCTACATGTTCAAAGTGATGATTCTCTTGGATCTGATGAACATCCACAATGTCCTGTATGTAAAGAAAATATATCACATACCACAATGGTCCCATTGTATGGCCGCGGTGGCCACACTCCACCGAGTGGAAAATCATCTTGTTGTGATGATAATTTTGTACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAACAGCATCTCAAAGTGATCAACATCAGCGACTTCCGTATCGAAATCCTTATCAGGGACAATATTTAAACTCCTCTTCATACCACCAACAAGAGGGTGATGCTACTTCACAAATGCTTAATCTTGGTGCCTCAATGACATCAAGATCTCGCCACCATACTGTGGTTAGAATGTTCGAGGAGATGATTTTTTCCGGAGTAGTCGGCCACCCGCCAAATTCTTATCAGATGGTGGGAAATAATAGCTCTAGACTGAGAAGGCAAGAGTTGCAGACTGATAAATTTTTGAACAGAATTTCAAATTTTCTATTTTGCTGCTTTCTTTTGTGTCTTATTGTCTTTTGA 711 0.4149 MAFEDCFSHELKTIPNSMSEAEESNGFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDDSLGSDEHPQCPVCKENISHTTMVPLYGRGGHTPPSGKSSCCDDNFVPPRPTASGAQALLATASQSDQHQRLPYRNPYQGQYLNSSSYHQQEGDATSQMLNLGASMTSRSRHHTVVRMFEEMIFSGVVGHPPNSYQMVGNNSSRLRRQELQTDKFLNRISNFLFCCFLLCLIVF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0372 236 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Mtr2g0372 236 SUPERFAMILY RING/U-box 25 89 - -
Mtr2g0372 236 Pfam Zinc finger, C3HC4 type (RING finger) 29 76 IPR018957 GO:0046872
Mtr2g0372 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 90 IPR013083 -
Mtr2g0372 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr2g0372 236 SMART ring_2 29 76 IPR001841 -
Mtr2g0372 236 ProSiteProfiles Zinc finger RING-type profile. 29 77 IPR001841 -
Mtr2g0372 236 CDD RING-HC_AtRMA_like 27 77 - -
Mtr2g0372 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0372 Mtr-Chr2 3668403 3670480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0372 11 222 C3H Transcription Factor Family AT4G27470 40.529 1.76e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0372 K10666 - gmx:100816864 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2973 4 43410014 43411108 Mtr2g0372 2 3668403 3670480 PCT