Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0352 ATGTCTGACATCGATAATCACGCATATCACGGTGCTTCTTCCCCCGACAAGCCAAGTTCTCGGGGATCTGGTCATGATAGCACGAGGATGAGAAGGAGAGATGGAGACAGGAAAAGTTTTCATGACCACCGGGACCGTCATAGAGATGATAAGTATGAAGGTTTTAAAGGAAGAGGCAAATATGACAGTTATAATCGGCAACGTGGCCGTGATTATGATAGGCATAATGACTATGATCGTGATAGAGATACAAGAAACAGATATGGAGCACATTCAAAGAGATCCAGGAGAGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACCGGTGTAACACCCACTGTCTCAGGGCAAATGCCGGGGATTGCTCATATGATTCAAGGAGCCACACAAAATTTCTCACCATATGGGATATCGCAGATTGGAGCTCTTTCATTAATGCAAGTTCAACCTATGACACAACAGGCTACAAGGCATGCTCGGCGAGTGTACGTTGGTGGGCTTCCTCCTTTTGCTAACGAGCAGTCAATTGCATCTTTCTTTAGCCAAGTCATGATTGCTATTGGGGGAAATTCTGCTGGATCAGGTGATTCTGTTGTCAATGTCTACATTAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGAGTTCGTAGGCCTACTGACTATAACCCTTCGTTAGCTGCAGTTCTAGGTCCCTGCCAGCCAAGTGCAAACCTCAACTTATCTGCTGTTGGACTTTCTGCAGGTACAATTGGTGGAGCTGAGGGACTCGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGTACAAATGAGAGAATTGCTTCAAGCTTTTGGCCCTCTTCGAAGTTTTGATATAGTTAGGGATAAAGAAACAGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCGCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGCACATTCTAAACCAGAAGAGGATAACATCTTTGCACGAGCTCAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCCCAACAAACGATGAAAGCCCCACCAAAGTTTTATGTTTAACTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCCGCAAATTTGGGACCTTGGTGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGTTGTCTACAGGAATTGGAAAGGTGTTCTTGGAATACTCTGATTGTACTGCTTGTTTAGCTGCAAAAAATGCTCTAAATGGTAGGAAATTTGGGGGTAGTATTGTGACTGCTTTTTATTATCCAGAAGAAAAATATCATAGTATGGATTATGACTTGTAA 1569 0.4308 MSDIDNHAYHGASSPDKPSSRGSGHDSTRMRRRDGDRKSFHDHRDRHRDDKYEGFKGRGKYDSYNRQRGRDYDRHNDYDRDRDTRNRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAALNGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVPTNDESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKYHSMDYDL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0352 522 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 23 520 IPR006529 GO:0003723|GO:0005634|GO:0006397
Mtr2g0352 522 CDD RRM1_U2AF65 177 259 - -
Mtr2g0352 522 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 521 - -
Mtr2g0352 522 SUPERFAMILY RNA-binding domain, RBD 299 513 IPR035979 GO:0003676
Mtr2g0352 522 MobiDBLite consensus disorder prediction 1 133 - -
Mtr2g0352 522 SUPERFAMILY RNA-binding domain, RBD 75 258 IPR035979 GO:0003676
Mtr2g0352 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Mtr2g0352 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Mtr2g0352 522 PANTHER RNA-BINDING PROTEIN 1 521 - -
Mtr2g0352 522 Gene3D - 173 271 IPR012677 -
Mtr2g0352 522 SMART rrm1_1 422 508 IPR000504 GO:0003723
Mtr2g0352 522 SMART rrm1_1 179 257 IPR000504 GO:0003723
Mtr2g0352 522 SMART rrm1_1 299 372 IPR000504 GO:0003723
Mtr2g0352 522 CDD RRM2_U2AF65 298 374 - -
Mtr2g0352 522 MobiDBLite consensus disorder prediction 22 88 - -
Mtr2g0352 522 CDD RRM3_U2AF65 420 507 - -
Mtr2g0352 522 Gene3D - 292 394 IPR012677 -
Mtr2g0352 522 Gene3D - 416 521 IPR012677 -
Mtr2g0352 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 261 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0352 Mtr-Chr2 3482093 3491817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0352 292 374 Eukaryotic Initiation Factors Gene Family AT1G71770 26.506 1.36e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0352 K12837 - vvi:100243034 648.277