Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0349 ATGTACATAAGTGGTGGTTCTTCTTCCATGGGAAGGTCTTTTAAGGAATCTCTTAAACTGCTTGAAGCTGATATTCATCATGCCAATACCTTGGCATCTGATTTTCCAAGGGAATATGATGGTGCTTGTCTTCAAATGAGAATGTCATACAGTCCAGCAGCACACTTGTTTCTTTTTCTGGTTCAATGGACAGATTGCAATCTTGCTGGAGCCCTTGGACTATTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACTACTACCATGTCTACACATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCGTCTTTGTTACAACTTGAAAAAGGTGTCACTGATGCTGAGGATAAAAAACAGAAGGTTGTATGCATGGAGCGGTATCGTAGAAGAGAAGATGAGGAGCACAAACAATTCTCAGACATAGACTTTGAAAGAGAAGAAGAGTGTGGAATATGTATGGAGATGAATAGTAAGATTGTGTTGCCTAACTGCAACCATGTCATGTGCCTGAAATGTTACCATGAATGGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTGAACTCGGGCGATCTCTGGATATTTACCGATAGTAGGGACATAGTAGACATGGAAACGGTAACAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCATACCAGAATCCCTTTTTGACCCTTATGACTCTCACTTAAGATAA 756 0.3981 MYISGGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDAEDKKQKVVCMERYRRREDEEHKQFSDIDFEREEECGICMEMNSKIVLPNCNHVMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWIFTDSRDIVDMETVTRENLRRLFMYIDKLPLIIPESLFDPYDSHLR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0349 251 SMART ring_2 155 192 IPR001841 -
Mtr2g0349 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Mtr2g0349 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Mtr2g0349 251 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 7 251 - -
Mtr2g0349 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Mtr2g0349 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 201 IPR013083 -
Mtr2g0349 251 PANTHER RING FINGER PROTEIN 41, 151 7 251 - -
Mtr2g0349 251 SUPERFAMILY RING/U-box 143 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0349 Mtr-Chr2 3461287 3466390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0349 103 210 C3H Transcription Factor Family AT5G01960 26.549 8.48e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0349 K25840 - gmx:100789769 463.766