Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0334 ATGGCGGATGATGGATTTCAATTTTCGACACTGTTTGCTGATGATGATTCCGATGATGAAAAGCTTGCAATGGATATTGAATCGTTTCTCAGCGTTCTTGATGAAGATTGTGTTCCTTCAGAGAGTAGTCCCGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGATCCATGATGATTTTTTACTTCAAAATGGGAATTCCTTGCTTGACTCCGAACATGAAAACCAGGGACCTTCATCACGGACCTGCTCTTCCCCAAATGTTTTTGCTGGTGGTTACAGGGACTCGTTCTCTGTTGCTGAAAGTGATGAAACTTGCTATGCAGAAAGGGCAGGAGTTTCTGAACATGAGATGCCTTCTTACAGTGTGGGCACAAGTTCGAACCCGAGTCTGTGGAAGGATGACGATTATAGCCAAATCAAGCATGTGGTAGATGATGTGGAATCTGAATATGCTTCACACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGAAGATTATGGAACAGCTTTGAAAGACACAATTGGAGTTTCTAGGCAGCCAGAAAATGACTCCTGTACATCCTTTGAAATGCCATTTGTGGATGTTGACATACCTACACATTTTGGAAATTCAGCTGATTCTACTTTTTGTCAAGGTTCCAATGTTCCTAGTGATTTTAGTGGCTACTATTCATCTTTGAACTGTTACCAGGGTATAGATGTTAGACCTGTTGTTACCGGCAGTTCTGGTTATTTTCCTAATGGTGTTGGTTCTGAATTCTGGAAAAATGAAGAGCCGGTGAGGAATATGAAGGTTGAAAAAACGGAATTCTTAACTGATACTACTAATGTGATTGGTGGCATGGACTTGAGCACTATCGGTCGGATCCCATTTCACGACAGTCAATTTATGCCAGTAAATAATGAATATCCTTCATTTTTTCCTGGTAATGCTAAATTTGAAGACGGTGAATCAGTGCAACAATCATCTTGTGTTCCATATATTTCTAGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGGGATGAAATGGTTATGCCTTACCAAAATACTTTTCACAATGACAATGCTGGTCTAGAGGTGAAACAATTACCTGGTATTTTCCCTACCACTGGATATCAGAATTACGATTTTTTCAAGGTGGAGGATAGTAATGCAATTGTAACAACGGAGGATGCCAATTATTACCAAGATCTTATTGGTGAAACTGCTAATAAATTTCCGGGAAACATGGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTATCTATTGCCCGAGCATCAATTGCCAATGGGAATCAGTATAATTGTAGTATGAGTGAACTAGAGAGTAAACCAAGCGAATGTAAAAGTATTGATTCTCAACTTTCCAAAAGAAGTACCGAGGGATCCAATGATGAAGATGACTGTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCCGAATTCAATTCCCTTAATATGTCACAATCTTCTAGATTTGATTATACCCAACCTTATATGGCAGGAGGCACAAGACCAAAGGCACACGACGAGCAGTACATATTACGAGCTGCTTTGCAGGATATATCTCAGCCAAAGTCAGAAGTTACTCCACCCGATGGACTGCTGGCTGTTCCTCTTTTACGTCATCAGAAAATTGCCTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTCAAGGAAAGGCCTCCATTACTTAAGACGTGCAATAATGCACAAAAAAGTGTATTACAAACCATGGACTTGGATGATGACCCACTTCCTGAGAATGGTTTAGTGAAGAAGGAATCTACTGTGTGTCAAGATGCATCCGATAGAAATGCAACCACAAGTGCGAATTTGTCAGTGCATGCAAAGGGCAGGCCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTTCTGCGACAGTGGGCTGACGAGCTGCATAATAAAGTAACCTGCAAAGCAAATCTCTCCGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACTTATTCAATTGTTAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATAAAGATGACAAAGAAAAAGGAATTTATGAAGATCATCCTGTGCCGAATAGGAAAAGAAAATGCCCTCCGAGTTCTAAAAGTGGCAAGAAGGCTTTGAACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCTTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTCCGAGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCATTCTGTTCTACCATAAAGATTCCTATCAATAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACGATCATGTTACGTCGGACAAAAGGTACACTTCTCGACGGGGAACCTATTATATCCTTGCCACCTAAATCTGTGGAGTTGAGAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTGGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTGAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAAACAGCAATGAAGCTTCCTCGGGAAAAACAGTTATTTCTTTTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGCAATGATGCTCCCGAAGAAGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAATCAGTGCATTTGTGAGCATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAACTGCAAAACTCGACTTAACATGTCTGCGGTGTTTCCCAAAGCCACACTGAACAGTTCTATATCTGATCCGGCTTGTGATCATTTACCTGGTTCTGAGGTTGAGGATTCTGAACCTTGTTCTCGGACTCAGCCATGTGATTCTTCAAAAATAAGGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACAATGCCATACTTCCCAAAGAAGTCATGTGCAGAGCACTTCTAGGGAAAGTTCTGATTGCAGCTCCACTTCTGCCAATAATGGAAAATCCATTAGTGATGTTCCAGAAAAGAAAGCCATGTTTATGGAGAAAAGCTCTAATGATTCAGTTGGTTCTCTTGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAGGGATGCTAGATTTACTTGAAGCATGTCTTAAGGATTCTTCAATTCAGTATAGAAGACTTGACGGAACAATGTCAGTCCTCGCTAGAGATAAAGCTGTTAAAGATTTTAACACACTCCCTGAGGTATCTGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCCTGCCACGTTCTCATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCACATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTAACTGTCAAAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGAGAACAATGGTTGCATCTGCATTTGGAGAGGATGGAACTAGTGGCCGTCAAACTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3912 0.4154 MADDGFQFSTLFADDDSDDEKLAMDIESFLSVLDEDCVPSESSPEDSSLKDVSPGESGIHDDFLLQNGNSLLDSEHENQGPSSRTCSSPNVFAGGYRDSFSVAESDETCYAERAGVSEHEMPSYSVGTSSNPSLWKDDDYSQIKHVVDDVESEYASHSSIIENVDGTFEDYGTALKDTIGVSRQPENDSCTSFEMPFVDVDIPTHFGNSADSTFCQGSNVPSDFSGYYSSLNCYQGIDVRPVVTGSSGYFPNGVGSEFWKNEEPVRNMKVEKTEFLTDTTNVIGGMDLSTIGRIPFHDSQFMPVNNEYPSFFPGNAKFEDGESVQQSSCVPYISSEGQSFNVKAEGDEMVMPYQNTFHNDNAGLEVKQLPGIFPTTGYQNYDFFKVEDSNAIVTTEDANYYQDLIGETANKFPGNMGNLNFRSLDKSLSIARASIANGNQYNCSMSELESKPSECKSIDSQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSAEFNSLNMSQSSRFDYTQPYMAGGTRPKAHDEQYILRAALQDISQPKSEVTPPDGLLAVPLLRHQKIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCNNAQKSVLQTMDLDDDPLPENGLVKKESTVCQDASDRNATTSANLSVHAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDKDDKEKGIYEDHPVPNRKRKCPPSSKSGKKALNSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELRKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPREKQLFLLKCLEASLALCGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLNMSAVFPKATLNSSISDPACDHLPGSEVEDSEPCSRTQPCDSSKIRAALEVLQSLSKPQCHTSQRSHVQSTSRESSDCSSTSANNGKSISDVPEKKAMFMEKSSNDSVGSLGEKAIVFSQWTGMLDLLEACLKDSSIQYRRLDGTMSVLARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTSGRQTRLTVDDLKYLFMM* 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0334 1303 CDD DEXDc_SHPRH-like 554 876 - -
Mtr2g0334 1303 Pfam SNF2-related domain 574 953 IPR000330 GO:0005524|GO:0140658
Mtr2g0334 1303 SMART ultradead3 550 853 IPR014001 -
Mtr2g0334 1303 Gene3D - 1061 1302 IPR027417 -
Mtr2g0334 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 985 1042 IPR013083 -
Mtr2g0334 1303 Gene3D - 733 887 IPR038718 -
Mtr2g0334 1303 Gene3D - 527 618 IPR038718 -
Mtr2g0334 1303 SUPERFAMILY RING/U-box 989 1050 - -
Mtr2g0334 1303 ProSitePatterns Zinc finger RING-type signature. 1007 1016 IPR017907 -
Mtr2g0334 1303 MobiDBLite consensus disorder prediction 1094 1129 - -
Mtr2g0334 1303 MobiDBLite consensus disorder prediction 728 763 - -
Mtr2g0334 1303 Pfam Zinc finger, C3HC4 type (RING finger) 992 1028 - -
Mtr2g0334 1303 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1139 1298 IPR001650 -
Mtr2g0334 1303 ProSiteProfiles Zinc finger RING-type profile. 992 1031 IPR001841 -
Mtr2g0334 1303 Pfam Helicase conserved C-terminal domain 1148 1245 IPR001650 -
Mtr2g0334 1303 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 421 1302 - -
Mtr2g0334 1303 MobiDBLite consensus disorder prediction 728 752 - -
Mtr2g0334 1303 CDD SF2_C_SNF 1148 1255 - -
Mtr2g0334 1303 MobiDBLite consensus disorder prediction 36 60 - -
Mtr2g0334 1303 SMART ring_2 992 1030 IPR001841 -
Mtr2g0334 1303 Gene3D - 645 732 IPR038718 -
Mtr2g0334 1303 MobiDBLite consensus disorder prediction 1094 1125 - -
Mtr2g0334 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1302 IPR027417 -
Mtr2g0334 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 876 IPR027417 -
Mtr2g0334 1303 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 421 1302 - -
Mtr2g0334 1303 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 627 838 IPR014001 -
Mtr2g0334 1303 SMART helicmild6 1162 1245 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0334 Mtr-Chr2 3317275 3327805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0334 200 1302 RAD5 or RAD16-like Gene Family AT1G61140 51.321 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr2g0334 SNF2_N 1.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0334 - - gmx:100805307 1713.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g0334 2 3317275 3327805 Mtr2g0334 2 3317275 3327805 ECH