Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0307 ATGATTACAGATCAAGTAGCAGTTACCATGGCTTCTTCTTCTGTTCCATCTTCTTCATCTTCGTCTATTTCTTCTTCAACCTTAAAACGTTGCTTCAATTCTGACTGTAAAGACTTCAGGTCTACTAAGAAAGGTTGGAGACTTCGCACTGGTGACCTAGCTCAACTCTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCATGCAAACACTTCTGGTTGGAGAAATTGTGAGACTTGTAGAAAGCGAATTCACTGTGGGTGTATTGTTTCAAGTAGCACCTTTGTTTTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAATGTTATTCTGCCATCTAACCTGCCGTGGCCACAATCTTTATCTCTTACAAATCGTTTATCGGAGAGATATAGAGACATGTCTGGCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTCTGTTCAATTCAGCTTCTTCATCTGACCAGCCTCCAGCTGTGCACTCTCTAGTTGATTTATCAAATAACTTTGACAAAATATATGGCAATGAAAGGCTGCCCCCCTCATCATTGGAAAAGAAAAATGAGGATTTGGCTGGAATATCAGCTAATTGGAATGTCAAACTCGGTTCAAGTGAAATGGTGCTTATGAACGGTAATACAGGAATGAGGAATGAGGACAAGTCAGGTCCGTGTTTAAATATGTGCCAACAGCCTCATACTCTAAAGGAAGATTCATCTTCTCAACCGTTTGGTTTATCTGTACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAATTCATCCACAACAAACTCCACCTCATCTAGGCAAGCAGTTTGGCGGCACTATGCATTTACCTCTTGACTCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAGTTGTTGCCACGTTATTGGCCCAGGTGTACTGAATTGGAGCTACAACAAATATCTGTCGATTCTAATTCTGTAATTACCCCCCTGTTCCAAAAAACTTTGAGTGCCAGTGATGCTGGGCGAATTGGGCGCTTGGTACTACCCAAAAAATGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCTCTTAAAATCCTCGATGCAAAAGGAAAAGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTGGAGGGTGTAACTCCATGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATCCGTTGCCATCCGATCAGGATAATGAAGCTAACAAGACTGGAAACGGATTTTCTGCTCCCGAAGTTGAATTGGCTGATCCTAGTTCCTGGTCAAATGTCGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAATGAGGATATAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAATCATGTCCCAAGCATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCGGTGCTTGGGAAGCCATCTATTTTCACTAGTGATAATATGGGTGAAAGGATTCAGTGGGCTCGATGTGAAGATTGTCTGAAGTGGCGCAAATTGCCAGCATGTGCACTTCTTCCAGCAAAATGGACATGTTCAGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTTACAACAGAACAACTTGAGAATTTGTTACCCCCTTGTAATTCAGCAGTTTCCAAAAAAATGAAGGCCACTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCAATCCTGGGGGAAGGGGAGGCTCTCCCATCTTCCCAGGCCACCACTAAACATCCACGACATAGACCCGGCTGCTCTTGCATTGTTTGCATCCAGCCGCCTAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAGCGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAGTCGGAAAAAGAAGCAGAAACAACACGTAAAAAGCAGCAGCAACAGAATTTCCAGCAACTGCCTTCATCTGAAATTTTGCTTGACGATGATTCCTTGCATAATAGTAATACGGGTGATAGCAGCCCAACTATGAACAAGGAGGGCAATGATGGTTCTGATGATGATCCTCACCGGATAAAATCATCCGTGTCTCCGTTTAAAGGCCAAATTGATCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCGCCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTTCACGATGCTGCTGCTGAGATGTATCTCAAGCAGCAGCAGACTTTGTTGAACTCTGGTACTGGAGATTCATCAGGTAGTCAGTCACAGCAGGTAGGAGATGTTGTTAGGGAAGTGAAGCTTAGCAACGGTGTTATTCATGGTAGCAGTAGTCATAATGCTGATAAGGAACATGCCCAGTCTTTGTCTATGAACGTGTGA 2706 0.4405 MITDQVAVTMASSSVPSSSSSSISSSTLKRCFNSDCKDFRSTKKGWRLRTGDLAQLCDRCGSAFEEGRFCDIFHANTSGWRNCETCRKRIHCGCIVSSSTFVLLDPGGIECFTCARKNVILPSNLPWPQSLSLTNRLSERYRDMSGKSWSQLAGSGPVPWKQAPSLFNSASSSDQPPAVHSLVDLSNNFDKIYGNERLPPSSLEKKNEDLAGISANWNVKLGSSEMVLMNGNTGMRNEDKSGPCLNMCQQPHTLKEDSSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPPHLGKQFGGTMHLPLDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTELELQQISVDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNPLPSDQDNEANKTGNGFSAPEVELADPSSWSNVDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPSIFTSDNMGERIQWARCEDCLKWRKLPACALLPAKWTCSDNSWDPERSSCSAAQELTTEQLENLLPPCNSAVSKKMKATKQDPDHAEALEGLDTLANLAILGEGEALPSSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQNFQQLPSSEILLDDDSLHNSNTGDSSPTMNKEGNDGSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDAAAEMYLKQQQTLLNSGTGDSSGSQSQQVGDVVREVKLSNGVIHGSSSHNADKEHAQSLSMNV* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0307 901 MobiDBLite consensus disorder prediction 736 831 - -
Mtr2g0307 901 CDD B3_DNA 354 455 IPR003340 GO:0003677
Mtr2g0307 901 MobiDBLite consensus disorder prediction 459 473 - -
Mtr2g0307 901 SUPERFAMILY DNA-binding pseudobarrel domain 353 456 IPR015300 -
Mtr2g0307 901 MobiDBLite consensus disorder prediction 455 487 - -
Mtr2g0307 901 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 28 830 - -
Mtr2g0307 901 ProSiteProfiles Zinc finger CW-type profile. 583 633 IPR011124 GO:0008270
Mtr2g0307 901 MobiDBLite consensus disorder prediction 752 788 - -
Mtr2g0307 901 MobiDBLite consensus disorder prediction 736 751 - -
Mtr2g0307 901 ProSiteProfiles B3 DNA-binding domain profile. 356 457 IPR003340 GO:0003677
Mtr2g0307 901 Coils Coil 736 757 - -
Mtr2g0307 901 Pfam B3 DNA binding domain 356 455 IPR003340 GO:0003677
Mtr2g0307 901 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 28 830 - -
Mtr2g0307 901 Gene3D - 587 640 - -
Mtr2g0307 901 SMART B3_2 356 456 IPR003340 GO:0003677
Mtr2g0307 901 Pfam CW-type Zinc Finger 588 630 IPR011124 GO:0008270
Mtr2g0307 901 Gene3D - 334 459 IPR015300 -
Mtr2g0307 901 MobiDBLite consensus disorder prediction 879 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0307 Mtr-Chr2 3008716 3018666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0307 27 787 B3 DNA Binding Superfamily AT4G32010 42.694 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr2g0307 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0307 - - gmx:100807252 1493.79