Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0288 ATGCGAATGTTAGCATATGGTGTGGCAGCAGATACGGTTGATGAATACATCAAAATAGGAAGTAGTACAACATTGGAGTGCTCACTTAGATTATGCAAAGGAGACATACGATTGTATGAGCAAGTGTACTTGAGAGCACTAATCCAAGATGACCTGCAAATAATACTACATGTTAGTGAAATGCGGGGATTCCTAGGGATGATCAGGAGTATTGACTGCATGCACTGGAAGTGGAAAAATTGTCCTAAAGCATGGGAAGGTCAATTTACCAAGGGGGATAAGGGAACCACCACAGTTATTCTTGAAGCAGTTGCATCTCATGATTTATGGATCTGGCATGTCTTTCTTAGATGCCCGGGAACGTTGAACGATATAAACGTTCTAGACCGGCCACCAGTGTTTGATGATGTGGAACAGGGAAAGGCTCCAAGAGTGAATTACTTTGTGAATCAACGTCCCTATAATATGACATACTATCTAGCTGATGGTATCTACCATTCTTATCCAACTTTCGTCAAATCAATTAGACTTCCTCAAAGTGAACTCGATAAGTTATTTACAAAACATCAGGAGGGATGTCGGAAGGACATCGAACATGCTTTTGGAGTGCTTCAAGCTCGATTTAAAATCATCTGTGAACCGGCTCGCTTGTGGGACATAGCCGATTTGGGTATCATCATGAGGTCATGCATCATATTACAAAATATGATTGTTGAGGATGAACGAGATACATATGCTCAACGTTGGACCGATTTTGAGCAACCTAGGGGAATTGGATCTAGTACAATGCAACCATACTCGACCGAGGTGTTACCAGCTTTTGCAAATCATGTGCGTGCTAGATTTGAGTTGCGTGATCCAGATGTTCATCACGAATTGCAAGTTGATGAGATGAAGAAGAAATGTGAGTTGTGCAAAAGTCCAGCAAAGTTGTTCTGTGAATCAGATCAAGCAAGCCTTTGTTGGGAATGTGATGCTAAGGTTCACACTGCAAACTTCATAGTCACAAAGCATCACAGGTTTCTTCTCTGCCATATTTGTCAATCTTTAACACCTTGGCATGGCACTGGACCCAAGTTTGTACCCACTATCTCCCTTTGTAACCACTGTGTTGCTGTTACCAACAACAATGATGAAGATAATGATCAAGATGATGATGATGATGATACTGAGGATGATGATGAAGAAAATCAAGTGGTTCCATGGAAATCTACAACTCCACCACCAGTTTCTTCTTGTTCTTCAAATAGTGCAAACTAA 1260 0.4111 MRMLAYGVAADTVDEYIKIGSSTTLECSLRLCKGDIRLYEQVYLRALIQDDLQIILHVSEMRGFLGMIRSIDCMHWKWKNCPKAWEGQFTKGDKGTTTVILEAVASHDLWIWHVFLRCPGTLNDINVLDRPPVFDDVEQGKAPRVNYFVNQRPYNMTYYLADGIYHSYPTFVKSIRLPQSELDKLFTKHQEGCRKDIEHAFGVLQARFKIICEPARLWDIADLGIIMRSCIILQNMIVEDERDTYAQRWTDFEQPRGIGSSTMQPYSTEVLPAFANHVRARFELRDPDVHHELQVDEMKKKCELCKSPAKLFCESDQASLCWECDAKVHTANFIVTKHHRFLLCHICQSLTPWHGTGPKFVPTISLCNHCVAVTNNNDEDNDQDDDDDDTEDDDEENQVVPWKSTTPPPVSSCSSNSAN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0288 419 Pfam B-box zinc finger 299 338 IPR000315 GO:0008270
Mtr2g0288 419 ProSiteProfiles Zinc finger B-box type profile. 297 343 IPR000315 GO:0008270
Mtr2g0288 419 PANTHER UNCHARACTERIZED 1 300 IPR045249 -
Mtr2g0288 419 CDD Bbox1_BBX-like 301 343 - -
Mtr2g0288 419 MobiDBLite consensus disorder prediction 377 419 - -
Mtr2g0288 419 MobiDBLite consensus disorder prediction 378 396 - -
Mtr2g0288 419 SMART bboxneu5 297 343 IPR000315 GO:0008270
Mtr2g0288 419 PANTHER OS06G0597250 PROTEIN 1 300 - -
Mtr2g0288 419 Pfam Plant transposon protein 43 245 IPR006912 -
Mtr2g0288 419 MobiDBLite consensus disorder prediction 400 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0288 Mtr-Chr2 2787645 2790745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0288 298 375 C2C2-CO-like Transcription Factor Family AT4G27310 62.821 1.40e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr2g0288 Plant_tran 1.1e-102 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0288 - - csat:104758417 495.738