Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0272 ATGACATCAGCAGCGGCTGAACAGCTTCTTGTGGCTGAACAGCTTATTGAACACTTGAAGTGCCCAATTTCGCTTGAAATTATGTCCGATCCGGTTATCCTCTCCTCCGGTCAGACCTTTGACCGTTCTTCAATCCAACAATGGCTTGACCTAGGTCACCGGAAATGTCCAATCACCAAATTTCCCCTCCTCCATACTTACCTCATTCCCAATCACGCCCTTCGTGCCATCATTTCCAGTTTTGCCCCTCCTCCACCCGAGACTCTTCCCCACCCTCCCCCTCTCCAAACCGAAGCCCCAACCCTAACCCTAACCCAAACCCTAGTCTCTGCCCTAACCTCTGATGAGGCGCCCACTAAGTACAAACTCGAATCGCTCAACAAACTCTTCTTTCTCTCAAAGCATGACCCCCTCTTCCGCCGCAACATCACCGACGCCCCCGTCATACCAGTTGTCTTCTCATGCCTCGCTAACGAGACCCTCCGCCACAAAGCTCTCGCCCTTCTCCTCAACATCAGCCTTGAAGATGAAAACAAGGTTGGCCTAATGGCAGAAGGCATCCTCGACCGTCTCATTCCCATTCTCTCCTCTGAAGTCTCCGACTGTAGCGCTGTGGCAGCAACCCTTATCACTAGCTTGGCTCTCTTGGAACTAAACAGGGCGACGATCGGGGCATACCCACATGCTATTGAATCTTTGGTTTCTCTCGTTCGCGATGGTGTTGGTAGAGAGAAAAAAGAAGCAGCTACTGCACTCTACACTCTCTGTCGTTTTCCAAATAATCGAGTAACCGTTGTGGCATGTGGAGCTGTACCAGTTTTGCTTCGAAGGCTCGACGCCGGTCTTGAACGATGTGTTGAAGTTATTGGGTTATTGGCTGAGCGCAAAGAAGCAATAGAAGAGATGGAAAAGTTTGGTGGGTGTGTTGAGGTTCTTGCTGGTGTTTTGAAGAATAGAACTAGAACTAAAAGAGGGGTTGAGTTTGCTCTTTTGGCTTTGAAATATCTCTGTTGTAACAGTGAAGAAAGTGTTACGGAAGCTGTTCGTGCTGGGGTTTTTGAAAGTTGCATGGAGTTGATGCAACATGATAGTGTTAGAGTTAGGGAAAATGCTTCTTATTTGATCCTGGTTCTGCGCTCAAGGAAGCAATGA 1152 0.4861 MTSAAAEQLLVAEQLIEHLKCPISLEIMSDPVILSSGQTFDRSSIQQWLDLGHRKCPITKFPLLHTYLIPNHALRAIISSFAPPPPETLPHPPPLQTEAPTLTLTQTLVSALTSDEAPTKYKLESLNKLFFLSKHDPLFRRNITDAPVIPVVFSCLANETLRHKALALLLNISLEDENKVGLMAEGILDRLIPILSSEVSDCSAVAATLITSLALLELNRATIGAYPHAIESLVSLVRDGVGREKKEAATALYTLCRFPNNRVTVVACGAVPVLLRRLDAGLERCVEVIGLLAERKEAIEEMEKFGGCVEVLAGVLKNRTRTKRGVEFALLALKYLCCNSEESVTEAVRAGVFESCMELMQHDSVRVRENASYLILVLRSRKQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0272 383 Pfam U-box domain 17 81 IPR003613 GO:0004842|GO:0016567
Mtr2g0272 383 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Mtr2g0272 383 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 380 - -
Mtr2g0272 383 PANTHER U BOX DOMAIN-CONTAINING 12 380 - -
Mtr2g0272 383 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Mtr2g0272 383 Gene3D - 103 381 IPR011989 -
Mtr2g0272 383 SUPERFAMILY RING/U-box 13 81 - -
Mtr2g0272 383 CDD RING-Ubox_PUB 21 60 IPR045210 -
Mtr2g0272 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 83 IPR013083 -
Mtr2g0272 383 SUPERFAMILY ARM repeat 100 378 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0272 Mtr-Chr2 2667140 2668657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0272 11 378 U-box Gene Family AT4G21350 49.596 9.92e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0272 - - mtr:MTR_2g011140 727.628