Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0172 ATGAAGATGAAGATGAAGAAGGAAGAAGAATCAACGGTTCAAATGGAATGTTTAACTTCAATTGATTCAACAACTCTCACACATTCAGAGCTTCAAGCACTTTCTCTCTCTTCTCTCTCCTCCTTCGACCTCAATTCTACACGCGAAATCGTCACTCCTAAAATCGATCCATCAACCTTCAACCACAGCGCTGGCTCCCACCGCACCTACTCCCGTCCTCACCGTCGATGTCGCGTCGCACCTCCGCTTCTTCCTACTCCCACTCTCCCCTCCGACCACCGCATCATCATCGATTACCTCAAACAGTTCATCAGAGAAGATCCCAAGTTCGACACGGTCGAGCTTCGGAATCCTTCAATTCCTGAGGTGAAGGAATTTCCATTGGCATTGCCTGCTGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCTAAAGTGAAAGCGCATTTGGAGGAAGAGATTGTGAATAAAAACGGTGTTGTGATTGATTTTGCTGCTTTATCGGAGGTTGAGCATCCTTTTGCTGCGGAGATTGCGAGAAGGACGGAAGGGTTAAAGGAGGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGGCAGTGGGGAAGTAGAAGGAGGAAGAGGAGGATTGTTGATGCTTCTGATTTTGGTGATGTGTTGCCTTTGGGATGGAAGCTTCTTCTTAGTTTGAAGAGGAAAGATGGTCGTGCTTGGATTTATTGCCGCAGATATATAAGTCCTAATGGACAGCAGTTTCTGTCTTGCAAAGAAGTTTCTTCCTATCTGCAGTCTCTTTTTGGTCATGCTGATGCACAGTTACAAATCACTCAAAGAAGTGAAAATATACTTCCGGAACTGAGAGTGACTACTGAAAATGTAAGTAACCCTGCTGCTGCTTCTGTTGCCCGCAAGGAGCAGGACCAACGACAGATTGTTGCCACTAACTCAGATGCGTCTGGTTTGTCCGTCTATAATGAACGATTCAAGGAAATTGCCTTGTTGGAGATGGATAACCTTGCAGATGTGCAAATACGTGATTTGTTTGAATGTCACAAGTGCAGCATGACCTTTGATGAGAAGGATGCGTATTTGCAGCACCTGTTGTCTATTCATCAGAAGACGACGAGGCGGTATCGACTTGGTTCATCTGTTTCAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAGCGTCGCTACAATAGTCATGTTGGGATTCATGTTAGGAATTATTTGAGGAGAGCTGAAGATTTGCCGGGTCAGCCTAACGTCCTGGGAGCAGAAGAGTCTCCGGTCACGGATGAGACACCTTCAAGGATCACGAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTATAGAGGATTCTGTCAGGGAACCATATTGTTCCTCTACACTAAATACGATACCTGTTTCAGAAATTGCGGTTGGCGACTTAGATGAAGATATAAATGCTGAGTCTCCATTCGGTGAACAGAAAATGGAAAAGAGCTTGACTGGCACAAATGTAGTTAGTGATCTAAATCAGCAAGGTAGTCCTCGTTTACCCATGGATGGAACAATAGAGGAAATTGATGCTAATAACCGAGTTGTTGATGCAAAGATGGTTAGTTTTCTAGATAACATGGGGTTGTTATCTGTAAATAAGAAAAATGTCGATGCACCTGATACTTCTGAAGGTAAAGGTGATGTGGCGCTGACTGTTGAAGGGTTTGATCGTTCTGGGAGTGAACTGCAAGGAGCTTCTCAAAGTCCCTTGCTTCATTCATCTGGGAATCACATGAAACCTGGATCCAAGAAGAGTGAAAATTCTGGTTGCACTAAAACTAGGGGGGATCTTAAACTTGATGAAGACAGTAGCAATAAGAGTGACTTGAAAATTGGTTTAGATAGCTGCAAAGATGTACCTGGTGTTTCTAATGTTCATGTGACAGCAATGCCAACTTCTACAGAAAATGTGGTCCAATCTAAGGTTTCTAACCCCTCGGTATCCCCAGAACAATCTTTGGATTCTTTTTCTGCATTCAGCTCCGACAAGGGGTTCCCGGAATTGAGGTTAGAAGATATTGGTTCTCTCGAGTATGATTTTGCAAGTGTTCCAGGTTCTCTTGATGTGTCAACTGAATTGGCAAATGACATAGTGGTGCAAGGGACATGTACATCCTCAGCTCATTCTGCATCACAAGAAGTTATGTTAAATATGGATTACAAAAATCAGCTCACAACCACATGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCTGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATCTTTAG 2421 0.4321 MKMKMKKEEESTVQMECLTSIDSTTLTHSELQALSLSSLSSFDLNSTREIVTPKIDPSTFNHSAGSHRTYSRPHRRCRVAPPLLPTPTLPSDHRIIIDYLKQFIREDPKFDTVELRNPSIPEVKEFPLALPAGEVRKRKRGRKPKVKAHLEEEIVNKNGVVIDFAALSEVEHPFAAEIARRTEGLKEEEELLGFLSDLVGQWGSRRRKRRIVDASDFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPNGQQFLSCKEVSSYLQSLFGHADAQLQITQRSENILPELRVTTENVSNPAAASVARKEQDQRQIVATNSDASGLSVYNERFKEIALLEMDNLADVQIRDLFECHKCSMTFDEKDAYLQHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRRAEDLPGQPNVLGAEESPVTDETPSRITKMDALIEIAQNSIIEDSVREPYCSSTLNTIPVSEIAVGDLDEDINAESPFGEQKMEKSLTGTNVVSDLNQQGSPRLPMDGTIEEIDANNRVVDAKMVSFLDNMGLLSVNKKNVDAPDTSEGKGDVALTVEGFDRSGSELQGASQSPLLHSSGNHMKPGSKKSENSGCTKTRGDLKLDEDSSNKSDLKIGLDSCKDVPGVSNVHVTAMPTSTENVVQSKVSNPSVSPEQSLDSFSAFSSDKGFPELRLEDIGSLEYDFASVPGSLDVSTELANDIVVQGTCTSSAHSASQEVMLNMDYKNQLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHL* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0172 806 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 10 795 IPR037472 -
Mtr2g0172 806 MobiDBLite consensus disorder prediction 588 634 - -
Mtr2g0172 806 ProSiteProfiles Zinc finger C2H2 type domain profile. 396 423 IPR013087 -
Mtr2g0172 806 ProSitePatterns Zinc finger C2H2 type domain signature. 398 418 IPR013087 -
Mtr2g0172 806 Gene3D Classic Zinc Finger 332 423 - -
Mtr2g0172 806 SUPERFAMILY DNA-binding domain 217 266 IPR016177 GO:0003677
Mtr2g0172 806 ProSitePatterns Zinc finger C2H2 type domain signature. 351 372 IPR013087 -
Mtr2g0172 806 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 211 283 IPR001739 GO:0003677
Mtr2g0172 806 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 377 IPR013087 -
Mtr2g0172 806 SMART c2h2final6 349 372 IPR013087 -
Mtr2g0172 806 SMART c2h2final6 396 418 IPR013087 -
Mtr2g0172 806 MobiDBLite consensus disorder prediction 55 74 - -
Mtr2g0172 806 MobiDBLite consensus disorder prediction 589 617 - -
Mtr2g0172 806 Gene3D - 201 316 - -
Mtr2g0172 806 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 10 795 - -
Mtr2g0172 806 MobiDBLite consensus disorder prediction 618 634 - -
Mtr2g0172 806 Pfam Methyl-CpG binding domain 220 264 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0172 Mtr-Chr2 1747439 1752381 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g0172 MBD 7.7e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0172 - - gmx:100526917 884.019