Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0124 ATGTCGGATACGGATGAGTTTCGCTGCTTCATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTAGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCCGGTCATTTTGCAAGGGAGTGCCCCAGTGAAGGAGAAAGAGGAGGAAGGTATGTTGGCAGGGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTATGGTGGGCGCGACAGGGACTCTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGACAGAGATGGTGGTGGGCGTGACAGAGATGGTGGTGGGCGTGACAGGGATGGTGGTGGGCGTGACAGGGATCGTGATCGTGCTGGACCGTATGAGCGTCGTGGATCTGGAGGCCATCGTTGA 735 0.5156 MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSRDRNRSRDYGGSRGSNGGECFKCGKPGHFARECPSEGERGGRYVGRESRYSGGYGPDRNADRSYGGRDRDSGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDRDRAGPYERRGSGGHR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0124 244 SUPERFAMILY Retrovirus zinc finger-like domains 103 142 IPR036875 GO:0003676|GO:0008270
Mtr2g0124 244 MobiDBLite consensus disorder prediction 127 147 - -
Mtr2g0124 244 MobiDBLite consensus disorder prediction 77 244 - -
Mtr2g0124 244 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Mtr2g0124 244 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Mtr2g0124 244 ProSiteProfiles Zinc finger CCHC-type profile. 122 137 IPR001878 GO:0003676|GO:0008270
Mtr2g0124 244 PANTHER TRANSFORMER-2-RELATED 1 160 - -
Mtr2g0124 244 Gene3D - 2 117 IPR012677 -
Mtr2g0124 244 Pfam Zinc knuckle 121 137 IPR001878 GO:0003676|GO:0008270
Mtr2g0124 244 MobiDBLite consensus disorder prediction 163 244 - -
Mtr2g0124 244 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 160 - -
Mtr2g0124 244 MobiDBLite consensus disorder prediction 85 111 - -
Mtr2g0124 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Mtr2g0124 244 Gene3D - 118 177 - -
Mtr2g0124 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mtr2g0124 244 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0124 Mtr-Chr2 1326343 1328964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0124 9 84 Eukaryotic Initiation Factors Gene Family AT1G71770 34.211 3.17e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0124 - - gmx:100815224 239.58