Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0111 ATGTCTTTCCGTAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGCTTTGATGTCAAACTTACTGGCCATCATCATAGAGGAAAGTCTCATGGTTCTGTACAGGATTTGCATGATCAGCCTCTTGTAATTCAAAATAGCTGCTGGGCGAACTTACCCCCGGAATTACTATTTGATGTTATTCGGCGACTAGAGGAGAGTGAGAATACATGGCCTTCAAGAAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAGGAGCCCAGAGTTCTGCGGCAAACTAACGTTCCCCGTGTCCCTGAAGCAGCCAGGGCCACGAGATGGAATCATTCAATGCTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTGAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACCAGGAGAACAACCTACACTGAGTATGTTATTTCAATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGATCAAACTTCCTTGGAACAAAGTTCATCATATATGATACACAGCCTCCCTGCACTTCTGCCCATATATGCCCTCCGGGGACTGGGAAGACGAGCCGTAGATTTTCTAAAAAGGTATCGCCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGAACTCGAGGCCCAAGGAAGATGCATTGCATTATGCATTCAATACCAAATTCGGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCAGAGCTAATTCACCGTTCCCTGGAGGACTCATTCCGGAGCATCTCATTTTCGAAGTCTCTAGATCATTCCATCGAGTTCAGCAGTGCACGGTTTTCTGAGATTGGGGGATCCTGTAATGAGGATGATGACGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCGCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCATCTGTTAAAAACTTTCAGTTGATTGCTTCCACCCAACCACCTGCTGGGGCGCCGACACCATCTCAACCAGCACCACCAGAACATGATAAGATTATTCTGCAATTCGGCAAAGTTGGGAAAGATATGTTTACCATGGATTATCGATATCCTTTATCTGCATTCCAAGCTTTTGCAATATGTTTAAGCAGCTTTGACACCAAGTTGGCTTGTGAATAG 1284 0.4486 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0111 427 Gene3D - 49 101 - -
Mtr2g0111 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Mtr2g0111 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Mtr2g0111 427 Pfam F-box domain 54 101 IPR001810 GO:0005515
Mtr2g0111 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Mtr2g0111 427 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Mtr2g0111 427 PANTHER TUBBY-RELATED 1 427 - -
Mtr2g0111 427 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Mtr2g0111 427 Pfam Tub family 115 422 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Mtr2g0111 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Mtr2g0111 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0111 Mtr-Chr2 1209623 1213445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0111 1 427 TUB Transcription Factor Family AT1G76900 70.130 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr2g0111 Tub 1.4e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0111 K19600 - gmx:100814578 820.076