Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0085 ATGAAAAGGAATCCCTTTCTTTTTGTGACTTCAATCCAAAGCCATCCCTTTCACCCTTTTTCTCCTTCCTCAAAACCCACATATAAAATAAAATACTTTCTCCATATTCTTCCTTCCATCTTCCTCAACAATTTACTTCAACCACATTACCATTTCATTTCTTCCAATAATATGTCTCTGACAGGCCGTCCTCGTGTCATTGTCAACGGTGTTCGAAGAATGAGAACCTTCCACTATTTCTGGTGTCTCAATTGCCAACGTACTGTTAGAATACCATCAACAAATACCATTCAAAATTATGGCTCTTTCTGTCCATATTGCTTCCATCAATTGCGTTATGAACTTGATATATCAAGGCCAAGACTTCTCATGAACGACCCTAACAACAGAAATATTGACCCTCCTCCTTCTACTAATCAGTTAATGGGTAGCTTAGCTTTCATCCTTGATCCGTCTCTTAGAAGACAAGACCAAAACAACACAACACCACAATGGGGAACAGAACATGAAGATGATCAAAATCAAAATCCACAAGCATGGATTACACTAAGATTTGTACGACCAACTCGTCCAACAAGGCCTATTGCACCACCACCACCACAAAACATGGCTCCTCAACTCAATGACATTGAAACCCCGTCATTAGACGAGTTCTTTGATGGTGTGATTCACAACAACATTAGACCGGGGCCGCCTCCAGCGTCACCTTCGGCCATTGAAGCCTTGCCAATGGTTAAGGTAACAGAAACACATTTAGCAAGTGATCCGAATTGTCCAATATGCAAAGATGAGTTTGAGGTTGATGTGCAAGTGAGAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCTTGGCTTCAAATGCATAACACTTGCCCTGTATGCCGTCACGAGCTACAAGGCGTTGATAATCATAATGCTAATTACTACTTTTTCCAAAATGAGATTGAGCAGCAGGGGTTCTTGGGGTTTGAGGAATTTACAAGCAGCTTTAATTGGATTTGGAACCAACTTGCTTCGATTAGGCCTATTCGAGCAGTCCTAGATTGGACGCGGTCCTATTTTGAACTCCACGCTCGTGCTCGTAGTAGAAGTAGCGCTTGGTGGAGAGCATTGCTCATTTCATAG 1137 0.4186 MKRNPFLFVTSIQSHPFHPFSPSSKPTYKIKYFLHILPSIFLNNLLQPHYHFISSNNMSLTGRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPSTNTIQNYGSFCPYCFHQLRYELDISRPRLLMNDPNNRNIDPPPSTNQLMGSLAFILDPSLRRQDQNNTTPQWGTEHEDDQNQNPQAWITLRFVRPTRPTRPIAPPPPQNMAPQLNDIETPSLDEFFDGVIHNNIRPGPPPASPSAIEALPMVKVTETHLASDPNCPICKDEFEVDVQVRELPCKHFYHSDCILPWLQMHNTCPVCRHELQGVDNHNANYYFFQNEIEQQGFLGFEEFTSSFNWIWNQLASIRPIRAVLDWTRSYFELHARARSRSSAWWRALLIS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0085 378 SUPERFAMILY RING/U-box 238 305 - -
Mtr2g0085 378 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 78 367 - -
Mtr2g0085 378 ProSiteProfiles Zinc finger RING-type profile. 258 299 IPR001841 -
Mtr2g0085 378 SMART ring_2 258 298 IPR001841 -
Mtr2g0085 378 Pfam Ring finger domain 257 299 IPR001841 -
Mtr2g0085 378 CDD RING-H2_RNF126_like 258 299 - -
Mtr2g0085 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 304 IPR013083 -
Mtr2g0085 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0085 Mtr-Chr2 963881 965995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0085 58 360 C3H Transcription Factor Family AT1G68180 31.803 3.77e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0085 K11982 - gmx:100793656 382.104