Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0068 ATGGAAGAGGTTAAACATAAATCTAGGAAAGAAGATACTGATTCTAAGAGGAGTCATCGTAGTGATCGAGATCGTAAGGATCGAAGCAGCGATGTTAGTAGGCACAAGGATAAGAGGGATCGTAGTGAATCTCGAAGGCACGATAGAGATAAAAGTACTGATTCTGATGAGAAACATGATAGAGATAGGGAGAAGAGGAGAGAAATTAAAGAGAAGGAGAAGGCACGTTTTCATGATGTCGAACGAGAAAAACAGAGGGAGAGGAAGAGGGAAAGAGAGAGGGATGAGAAGGAAAAGGAGAGAGTGAGGGAGAAGGAAAGAGAGAGGGAAGAGAAAGAAAGGGAGAGAGTTAGGGAGAGAAAAGAGGAGAAAGAGAGGATTAGAGAGAAAGAAAGAAGGGAGAGGGAAAGGAGGGATTATGATAGAGAGAAGGAAAAGGAAAAGGAAAAGGAAAAGGAGAGAGATAGAGGTCGGAGAGTACGTGAGAGGGAGAAGCATCGGGATGTTGATAGTGAAAACAGTGATGGGGAATTGAGGGAGAGAAATCGTAAGCGGCATAAGAAAGATGATGACGATTACAAGAGGCGGGAGAAGGAAAAGAGTTCGGGAAAGTCAAGTAGGAAAATTGAGGTGGTTGATGGGAGTCCTAGGAGAAAGAGTGACGGAGATGACTCGGATTCTAAAGAGAAAGCTAAGAAACAGACCCGTGAGGAGGAGATGGAAGAGGAACAAAAGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAAAGTTCAAGCCTGGCAAGAGCTAAGGAGGTTGGAGGAAGAGGCACAAAGAAAAAAGCAAGGTGAAGCAAGTGTTGTTGAAGCCGAGTCTGGAAAGAAATGGACACTTGATGGGGAGGAATCTGATGATGAAGATGGAACTGGTAAACATACGAGTATGGATATAGACGAAGACGACAAACCTGCTGATAATGAACCTACTGATTCAATGGCGGTAGATGTTGACAAGGGAACTGTTGCGTCTGATTTACAGAATGGAGACGCTGGTGCTCCTGCAGAAGATGAAATAGACCCGTTGGATGCTTTCATGAATTCTATGGTTCTTCCCGAGGTTGAAAAGCTTAATAATGCTGTTAACTCAGCACCTCCTGATAAAGCTTCTGACTTGAATCCCAAAGATAAAGGGGCTGAGAGTAGAAATGGTGGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCTGGTGAAGAGTCTGATTCAGATTATGCAGATCCTGAAGTTGAAGGCGATCCATTAGATGAAGATGACGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAAAAGCTTTCTATTGTTGACCACTCAAAGATTGACTATATACCATTCAGGAAGAATTTCTATATTGAAGTGAAGGAGGTTTCAAAGATGACTGTTGAAGAAGTTGCATTTTACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAATCAAACTGGACTCACCAGCAAAATTTTAGACACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCGTTGCCAAAACCGGGTCAGGTAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGTAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAGGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAATTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCTGGTAGGATGATTGACATATTGTGCACTAGTAGTGGAAAAATTACTAACCTGCGTAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGGATGTTTGATATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTCCCCCGCCAAGTTGAAATTTTGGCTCGCAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAAGATAAATGTGATGCACTGTTCAAGGATCTAATGAAACATGGTTATCCATGTCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGCTGGTTGCGACAAGTATTGCTGCCAGGGGATTGGACGTTAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGTACTGGCCGTGCTGGCCGAAAGGGTTGCGCTATCACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTGAAATCCCTTGCCGAGGGCTTTATGGCGAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCACTGGGTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCGAAGAAAGCCCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCAGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCATACTCCGATCTCTGCAGCCCAACTGATTCCAATTGGTGGGATACCATCTGTTTCAACAGTCTTGCCTGTGATAGGATCTATTGCTACAAACGATGGGGCTACTCGAGCAGCATTAGCTGCTATGAACCTGCAGCAAAACATAGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGTTGGAAAGTCACACACAAGGAAACTTTGGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACTACAAGGGGGCAGTTTTTCCCACCTGGCAAAGTCGCAGGGCCTGGGGATCGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAACAGTCTGTTAAGAGAGCCAAAGCAGAATTGAAACGAGTTTTGGAAGATATCACTCATCAGGCTTTGCAACTACCTGGTGGAACTCAACCTGGCAAATACTCTGTTGTATAA 3345 0.4329 MEEVKHKSRKEDTDSKRSHRSDRDRKDRSSDVSRHKDKRDRSESRRHDRDKSTDSDEKHDRDREKRREIKEKEKARFHDVEREKQRERKRERERDEKEKERVREKEREREEKERERVRERKEEKERIREKERRERERRDYDREKEKEKEKEKERDRGRRVREREKHRDVDSENSDGELRERNRKRHKKDDDDYKRREKEKSSGKSSRKIEVVDGSPRRKSDGDDSDSKEKAKKQTREEEMEEEQKRLDDEMEKRRRKVQAWQELRRLEEEAQRKKQGEASVVEAESGKKWTLDGEESDDEDGTGKHTSMDIDEDDKPADNEPTDSMAVDVDKGTVASDLQNGDAGAPAEDEIDPLDAFMNSMVLPEVEKLNNAVNSAPPDKASDLNPKDKGAESRNGGQSRKGSNKSIGRIIPGEESDSDYADPEVEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEVSKMTVEEVAFYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVVGDGPIGLIMAPTRELVQQIHSDIRKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLAEGFMAKVTQGLEQAHGTGYGGTGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHHTPISAAQLIPIGGIPSVSTVLPVIGSIATNDGATRAALAAMNLQQNIAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKAELKRVLEDITHQALQLPGGTQPGKYSVV* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0068 1114 SMART helicmild6 764 845 IPR001650 -
Mtr2g0068 1114 Coils Coil 230 260 - -
Mtr2g0068 1114 MobiDBLite consensus disorder prediction 418 434 - -
Mtr2g0068 1114 MobiDBLite consensus disorder prediction 1 313 - -
Mtr2g0068 1114 MobiDBLite consensus disorder prediction 1 436 - -
Mtr2g0068 1114 SMART ultradead3 522 727 IPR014001 -
Mtr2g0068 1114 Gene3D - 713 887 IPR027417 -
Mtr2g0068 1114 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 712 IPR014001 -
Mtr2g0068 1114 MobiDBLite consensus disorder prediction 919 953 - -
Mtr2g0068 1114 Pfam Helicase conserved C-terminal domain 737 845 IPR001650 -
Mtr2g0068 1114 Coils Coil 70 153 - -
Mtr2g0068 1114 MobiDBLite consensus disorder prediction 919 933 - -
Mtr2g0068 1114 Gene3D - 456 712 IPR027417 -
Mtr2g0068 1114 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 884 IPR001650 -
Mtr2g0068 1114 CDD SF2_C_DEAD 724 854 - -
Mtr2g0068 1114 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 658 666 IPR000629 -
Mtr2g0068 1114 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 503 531 IPR014014 GO:0003724
Mtr2g0068 1114 Pfam DEAD/DEAH box helicase 528 699 IPR011545 GO:0003676|GO:0005524
Mtr2g0068 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 861 IPR027417 -
Mtr2g0068 1114 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 169 958 - -
Mtr2g0068 1114 CDD DEADc_DDX46 492 713 - -
Mtr2g0068 1114 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 169 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0068 Mtr-Chr2 786903 792590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0068 490 865 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 1.52e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0068 K12811 - gmx:100784306 1494.18