Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0055 ATGCAACAACAACAACGTCAATCCAATTCTGTTCAAATTCCTCAACACAATTGGTTGAAGCATGTTAATTCTCACAATAATTTCTCCTCCCAACCGCAGTTTCTCACTTCCAATTTCCTCTTTACTCTTCCAACTAACAAACCAATCGACAGAGCTGCTACTACCACGTCTATAGTCCGACAAGGTCAAAACGTTCAAAGTTCACAAAGAGCACAGGTTGATAAGGCCTGGTCTGCTCTTTCAAGGCTTCAGTTATCCAGCAGGAGTTATGTCCCAATTGGAAAATCTGTTAAAGTCACTCCTCAGTTTCATGAAAACAGGACAACAACTTCCTTCCAAGGAAGCTATGAGAATAACAAGCTTAACCATCCTGATGTTGCCGCAACTCCAACTGTCATTAATCATACTTCTCGGGTTGTAGATAGTTTAGTGAACAATCACACAAAGTACACAGGCCAAACCAACGAGTCTACAAAATGTGTAGCTGATACTATTAATATTGATGATGATGACATACTTGAGAGCATGGATCTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCCAATGTCCAAGTTTCCTCCTTTTACTCCAACGGCAGATAAGGATAATTTTGCCGGACAAGGGGATACTTTTTTGCCACCAGAGCTGTGCTTGAATTGCATCCACGGCTACAAGTTAGGGATTTGCCCCGAAGCAGCAAGTCATTTGCAGGAATTCAAGGATAATCTTATTGCTATCTCTAATGAACTGATCGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCCAGGACAGGTCACAGCTGAATAACCAAATTCAACAACTCGAAAAATATATTCATTCCAGTAACCTTGAAGAAGAAAGACAAAAGTCGAATTTTGTTACATCCATGGCACCACCTACGTCTTTTGTGTATGAAACACCCCAACGGAATGTCATCAGTAGTGGACCTGTCATCAGTAGTGGACTAAATAGATATGACGACCAGGTTTATATGGATTATGGTACGTATGGGACATCATACCAGTCTTCATGCGGCATGCCATCAGGTCCAGTAGAGAGGGAACCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAAAGTATTTGGAAATCACTCTTTTCGCCCCAATCAAAGAGAAGTCATTAATGCCACAATGAGTGGGTGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGCCTAACCTATCAGCTACCAGCTCTTATTAATCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCAAATTTGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTAAATTCTGATTACTGCAAATACAAGTTGTTATATGTGACTCCTGAAAAGGTTGCCAGAAGTGACGTTCTTTTGCGACAATTGGAGAGTTTACATGGTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCGTTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTATGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGCGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTCATGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTTCCAAAATCTGTTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGCGTAGGAGCAGTAGAGCAAAGTAACATGACATCTGGTTACAGTCGTTTTAATGCGACAAATTCAGGGAGATTACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAACGATGTTGATTGTCGGCGCCTTATTCAGCTAGTTCATTTTGGGGAGAAGTTTGATTCTTCAAACTGTCATAAAACATGTGATAATTGCGTGAAGATCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCGAAACAATTGGTTGAACTAGTTAAGCTAACGGGACAGAAGGTCTCGGCATCTCACATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGGCATGAGACTGTGCGACTTCATGGTGCCGGGAAGCATCTAGCAAAGGGCGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGACTTTATTGCGGAAGTGGTAAAGAAAAGTGATTTTTATGGATCTGTATCATCAGTGTTGAAGGTAAATGAGCAGAAGGTCCGTAACATGTTGTTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCTGGTAAATGTGATTCAATTTCAGCCAAAGGTTCTCTGGCATCTGCGAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTGAAACTGAAATAGACTTGGATCTATCAGCTAAGTTGTACACTGCTCTGCGGATGTTGAGGACAACTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTCACCACATATTTGGCAATGCTACGCTGCAGCAGATAAGCAAGAAATTACCGAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAGACCATTGCGAAAACCATAAATGAATACTACAATACGGATAAAAACAGCAGCGGCAGCAAAGGCAGTGTGGATTCAGCCAAAAGAAGACGAGAAGCAAATAGAACGCCAGATTCAAATGGTGAGGATGATGATGCCTTAATCAAAAGTACTGGTCGCTCCAAGAAAAGGACGGTAAAGAGACAAATTAAAAAGGCTGAGATATATGAATCAGAAGAGGAAGACTATTACCATGGATGCCTTGACGAGGACCTAGACTGTATCGATATTGACAATGTCGTATTAGATAAATTAACTGGTACAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCATGA 3480 0.4098 MQQQQRQSNSVQIPQHNWLKHVNSHNNFSSQPQFLTSNFLFTLPTNKPIDRAATTTSIVRQGQNVQSSQRAQVDKAWSALSRLQLSSRSYVPIGKSVKVTPQFHENRTTTSFQGSYENNKLNHPDVAATPTVINHTSRVVDSLVNNHTKYTGQTNESTKCVADTINIDDDDILESMDLDQIVEKYQSTCTPQPPMSKFPPFTPTADKDNFAGQGDTFLPPELCLNCIHGYKLGICPEAASHLQEFKDNLIAISNELIDNVENLSSVQIAKLRQDRSQLNNQIQQLEKYIHSSNLEEERQKSNFVTSMAPPTSFVYETPQRNVISSGPVISSGLNRYDDQVYMDYGTYGTSYQSSCGMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANLEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLESLHGRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAHVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSVEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSVGAVEQSNMTSGYSRFNATNSGRLLETNTENLLRMVSYCENDVDCRRLIQLVHFGEKFDSSNCHKTCDNCVKITSFVEKDVTEIAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFIAEVVKKSDFYGSVSSVLKVNEQKVRNMLFGGQRIILRFPSSVKASKPGKCDSISAKGSLASAKLNLPIDIPDQPETEIDLDLSAKLYTALRMLRTTLCREAGEGVMAHHIFGNATLQQISKKLPRTKEELLDINGISKTKVSKYGDRLLETIAKTINEYYNTDKNSSGSKGSVDSAKRRREANRTPDSNGEDDDALIKSTGRSKKRTVKRQIKKAEIYESEEEDYYHGCLDEDLDCIDIDNVVLDKLTGTNAAGRVLPQWTAS* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0055 1159 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 401 876 IPR004589 GO:0004386|GO:0006310
Mtr2g0055 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 866 IPR027417 -
Mtr2g0055 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 417 592 IPR014001 -
Mtr2g0055 1159 CDD DEXHc_RecQ 400 599 - -
Mtr2g0055 1159 Pfam RQC domain 822 938 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mtr2g0055 1159 SMART ultradead3 405 608 IPR014001 -
Mtr2g0055 1159 PANTHER DNA HELICASE RECQ FAMILY MEMBER 104 1126 - -
Mtr2g0055 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 741 IPR027417 -
Mtr2g0055 1159 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 104 1126 - -
Mtr2g0055 1159 Pfam RecQ zinc-binding 734 815 IPR032284 -
Mtr2g0055 1159 Gene3D - 373 599 IPR027417 -
Mtr2g0055 1159 Gene3D - 823 933 IPR036388 -
Mtr2g0055 1159 MobiDBLite consensus disorder prediction 1069 1097 - -
Mtr2g0055 1159 CDD SF2_C_RecQ 600 732 - -
Mtr2g0055 1159 Pfam HRDC domain 980 1048 IPR002121 GO:0003676
Mtr2g0055 1159 ProSiteProfiles HRDC domain profile. 976 1058 IPR002121 GO:0003676
Mtr2g0055 1159 Gene3D HRDC domain 975 1064 IPR044876 -
Mtr2g0055 1159 Gene3D - 600 819 IPR027417 -
Mtr2g0055 1159 SMART helicmild6 642 723 IPR001650 -
Mtr2g0055 1159 ProSiteProfiles Rhodanese domain profile. 632 674 IPR001763 -
Mtr2g0055 1159 SMART RQC_2 825 936 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mtr2g0055 1159 SMART hrdc7 976 1058 IPR002121 GO:0003676
Mtr2g0055 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 617 778 IPR001650 -
Mtr2g0055 1159 Pfam Helicase conserved C-terminal domain 616 722 IPR001650 -
Mtr2g0055 1159 SUPERFAMILY HRDC-like 979 1052 IPR010997 GO:0000166|GO:0044237
Mtr2g0055 1159 MobiDBLite consensus disorder prediction 1057 1098 - -
Mtr2g0055 1159 Coils Coil 268 295 - -
Mtr2g0055 1159 Pfam DEAD/DEAH box helicase 411 579 IPR011545 GO:0003676|GO:0005524
Mtr2g0055 1159 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 531 540 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0055 Mtr-Chr2 587561 595627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0055 632 736 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 2.35e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0055 K10901 - gmx:100800006 1751.87