Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0054 ATGTCTCTCAACCAGTACCACCACCAACAGCAGCAGCAACCATCGCATGTGCACCCTCAAATATGGCAGACATGCACCGGCGCTGCCGTCCAAATACCAAAGTTGCATTCCAGAGTTTACTATTTTCCACAAGGCCACTTAGAACATGCTTCTTCTTCCTCCTCCAATGCTTACATTCACTCCCTTGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCTGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTGCTCACTCCTGTAACCAATAATTCATGTGTTCAAGATCCTCATGAGGTTCCTAATTGCAGCAACGACGATGATGTCTGCGATGAGGTAATTGATTCGTTTACAAGGATTCTCGCCCTTACTAATGTAAGCAAGCATGCATTCTACATACCTCGGTTTTGTGCTGAAAATATGTTCCCGCCGCTTGGCATGGAGGTTTCTCAACACCTCCTCGTCACTGACGTTCATGGTGAAGTTTGGAAGTTTCACCATGTCTGCCACGGCTTTGCCAAGAGAAACGTCTTTTATACCTCTGAATGGGCTTCGTTTGTTGAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCCACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGACGCCGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTAGAGGTGATGATTGGTGTGATTTTGTAGTGGATGGTAATATTGTTGATGAATCAATGAAGATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCACTACTGTATCTCGTACTTCTAATTTATGGCGCATGCTTCAGGTTAATTGGGATGAATTTCAAATCTCGCAAATTTCAAGACGAGTCAGCCCGTGGTGCGTTGAGCTTCACAAACCTGCTCCGACGCCATTCCCCCAAACAAAAAAATTTAGAACTACTCAAAGTTCTGCCCAACTAAGTGATAAAAAGGAAACATTATTGAATGATGATGGTTTTCCTGTTGATATACAGCGAGTGAGGCATGATCTTGTTTCCATATCAGGTCCTATACATAGCCATATTATTTTGAACTCCTCTGAGACAAAGTTTCCTGCGACTCACAATTGCAACACCAAAAATGACAGTGATGGTTCAATTATGTTATTTGGTAAGATCATACAGCCTCATGTAAGCAATTTTCACAATTCTCATATCAAGGGAGATGATGGCTATAAGAGCTGTGGATTTGGTGTAAAGAACTAG 1371 0.4267 MSLNQYHHQQQQQPSHVHPQIWQTCTGAAVQIPKLHSRVYYFPQGHLEHASSSSSNAYIHSLDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPVTNNSCVQDPHEVPNCSNDDDVCDEVIDSFTRILALTNVSKHAFYIPRFCAENMFPPLGMEVSQHLLVTDVHGEVWKFHHVCHGFAKRNVFYTSEWASFVERKKLDVGDAVVFMKNSTGKLFVGIRRKDAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWCDFVVDGNIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTITTVSRTSNLWRMLQVNWDEFQISQISRRVSPWCVELHKPAPTPFPQTKKFRTTQSSAQLSDKKETLLNDDGFPVDIQRVRHDLVSISGPIHSHIILNSSETKFPATHNCNTKNDSDGSIMLFGKIIQPHVSNFHNSHIKGDDGYKSCGFGVKN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0054 456 CDD B3_DNA 126 224 IPR003340 GO:0003677
Mtr2g0054 456 Coils Coil 225 248 - -
Mtr2g0054 456 Pfam Auxin response factor 242 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g0054 456 SMART B3_2 127 226 IPR003340 GO:0003677
Mtr2g0054 456 ProSiteProfiles B3 DNA-binding domain profile. 126 226 IPR003340 GO:0003677
Mtr2g0054 456 Gene3D - 279 343 - -
Mtr2g0054 456 SUPERFAMILY DNA-binding pseudobarrel domain 126 229 IPR015300 -
Mtr2g0054 456 Pfam B3 DNA binding domain 132 225 IPR003340 GO:0003677
Mtr2g0054 456 Gene3D - 124 225 IPR015300 -
Mtr2g0054 456 PANTHER AUXIN RESPONSE FACTOR 17 12 377 - -
Mtr2g0054 456 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 377 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0054 Mtr-Chr2 569264 572483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0054 16 408 B3 DNA Binding Superfamily AT1G77850 35.056 2.06e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g0054 B3 9.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0054 - - mtr:MTR_2g006270 704.901