Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0048 ATGTCTCTTCAGAAGCAACCATCGCATGTGCGTCCAGAAATCTGGCACACATGTGCTACCGCTGCCGTCAAAATTCCAAAGTTGCATTCAAGGGTTTATTATTTCCCACAAGGTCACCTAGAAAACGCTTCTCCTTCTTCTTCCTCCATTACTCACACACACTCTTTTCTACAAAGTTTTCGTCCTTTCACTCTTTGTATTGTCTCCGCTGTTGATCTCCTTGCCGATCCTCACACGGATGAGGTCTTTGTTAAACTTCTACTTACTCCAATAACCAACGATGTCCATCTTGAAAACCCTAAAGAAGAGGTTGCCAATCTCAACGACCGCAATGAAGTTGTTTCCTTTGTCAAGACTCTCACTCGTTCTGATGTTAACAACGCTCGGTCATTCCACATACCTCGCTTTTGTGCCGATAATGTCTTCCCGCAGCTTGACCTAGAGGCCGAATCCTCGTCTCAACACCTGTTCGTTACCGACGTTCATGGTGAAGTTTCAAAGTTTTACCATGTCTGCCGCGGGTTTCCCAAGAGAAACATGTTATATATCTCTGAATGGAATTCGTTTGTTAAGAGGAAGAAACTCGTAGCCGGAGATTCTGTTATTTTCATGAAAGACTCAACGGGAAAGATATTCGTTGGAATTCGCAGGAACACGCAGTTTGTTGCAGCGGCTGCAGAGCAGAAGAAGGATGAGTTGGAGAAGGCAGTAATGGAGGCATTGAAGTTGGCGGAAGAGAACAAGGCATTTGAAATTGTTTACTATCCCCAAGGTGATGATTGGTGTGATTTTGTAGTGGATGGTAATGTTGTTGATGAATCAATGAAGATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTATTGTATCTCGTACTTCTAATTTATGGCGCATGCTTCAGGTTAATTGGGATGAATTTCAAGTCTCGCAAATTCCAAGACGTGTCAACCCGTGGTGGGTTGAGCTTATTTCTCACAAACCTGCTCCGACGCCATTCCCCCAAACAAAAAAATTTAGAACTACTCAAAGTTCTGCCCAACTAAGTGATAAAAAGGAAACATTATTGAATGGTGATGGTTTTCCTGTTGATATACAGCGAGTGAGGCATGATCTTGTTTCCATATCAGGTCCTATACATAGCCATATTATTTTGAACTCCTCTGAAACAAAGTTTCCTGCGACTCACAATTGCAACACCAAAAATGACAGTGATGGTTCAATTATGTTATTTGGTAAGATCATACAGCCTCATGTAAGCAATTTTCACAATTCTCATATCAAGGGAGATGATGGCTATAAGAGCTGTGGATTTGGTGTAAAGAACTAG 1371 0.4179 MSLQKQPSHVRPEIWHTCATAAVKIPKLHSRVYYFPQGHLENASPSSSSITHTHSFLQSFRPFTLCIVSAVDLLADPHTDEVFVKLLLTPITNDVHLENPKEEVANLNDRNEVVSFVKTLTRSDVNNARSFHIPRFCADNVFPQLDLEAESSSQHLFVTDVHGEVSKFYHVCRGFPKRNMLYISEWNSFVKRKKLVAGDSVIFMKDSTGKIFVGIRRNTQFVAAAAEQKKDELEKAVMEALKLAEENKAFEIVYYPQGDDWCDFVVDGNVVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISIVSRTSNLWRMLQVNWDEFQVSQIPRRVNPWWVELISHKPAPTPFPQTKKFRTTQSSAQLSDKKETLLNGDGFPVDIQRVRHDLVSISGPIHSHIILNSSETKFPATHNCNTKNDSDGSIMLFGKIIQPHVSNFHNSHIKGDDGYKSCGFGVKN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0048 456 Coils Coil 216 246 - -
Mtr2g0048 456 Gene3D - 277 342 - -
Mtr2g0048 456 SMART B3_2 116 219 IPR003340 GO:0003677
Mtr2g0048 456 PANTHER AUXIN RESPONSE FACTOR 235 373 - -
Mtr2g0048 456 PANTHER AUXIN RESPONSE FACTOR 8 227 - -
Mtr2g0048 456 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 227 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g0048 456 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 235 373 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g0048 456 CDD B3_DNA 115 217 IPR003340 GO:0003677
Mtr2g0048 456 Gene3D - 113 219 IPR015300 -
Mtr2g0048 456 ProSiteProfiles B3 DNA-binding domain profile. 116 219 IPR003340 GO:0003677
Mtr2g0048 456 Pfam B3 DNA binding domain 116 218 IPR003340 GO:0003677
Mtr2g0048 456 SUPERFAMILY DNA-binding pseudobarrel domain 112 217 IPR015300 -
Mtr2g0048 456 Pfam Auxin response factor 240 312 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0048 Mtr-Chr2 522097 524494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0048 9 384 B3 DNA Binding Superfamily AT1G77850 36.281 4.09e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g0048 B3 6.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0048 - - mtr:MTR_2g006270 929.472