Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0020 ATGGCGTCTGCTAGCCTTGGAAATGGCGGTATCGGCAGCAGTTCAAGGTCTGCTGCTGCCTTAAGAGCTGCTTCTTCTTCCGTCGATTGGCTTGGCAGAGAGATGCTTCACATGAACCTCAATCGTGATCATGACCACGATGACGACGACGAGGATGATGCCAGAGAGAGTGAGCCTGACATCATTGATGGTGTTGGTGCTGAAACTGGACATGTTATACGAACAAGCATTGCTGCACGAAACGGTCAATCTAAGCAGAATGTTAGTTATATTGCGGAACACGTAGTTGGGACAGGCTCTTTCGGAACTGTTTTTCAAGCTAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAACAGAGAGTTACAGATTATGCAAATGCTCGACCATCCAAATATTGTCGCCCTCAGGCATTGTTTCTTTTCAACCACCGACAAAGAGGAGCTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACCGTCAATCGTATTGCAAGAAACTATAGCAGGATCAACCAGCGAATGCCTTTGATATACGTGAAACTTTATACGTACCAGATATGCAGGGCCCTTGCCTACATACATAATTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCGCACACCCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCATATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCCGAATTACTTCTTGGCCAGCCCTTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGGGAGGAGATTAAGTGCATGAACCCAAATTATACCGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTGCCCCCAGAAGCAGTTGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGTATTCACCCCTTCTTTGATGAATTAAGGGACCCAAACACCCGCCTTCCCAATGGTCGTCCACTGCCTCCGCTGTTTAATTTTAAACCCCAGGAACTTTCTGGTATTCCACCTGATGTCATCAACCGGCTTATTCCAGAACATGCTCGTAAACAGAATTTATTTATGGCTTTGCACACCTAG 1287 0.4429 MASASLGNGGIGSSSRSAAALRAASSSVDWLGREMLHMNLNRDHDHDDDDEDDARESEPDIIDGVGAETGHVIRTSIAARNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0020 428 SUPERFAMILY Protein kinase-like (PK-like) 89 401 IPR011009 -
Mtr2g0020 428 Gene3D Phosphorylase Kinase; domain 1 75 169 - -
Mtr2g0020 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Mtr2g0020 428 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g0020 428 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 425 - -
Mtr2g0020 428 Gene3D Transferase(Phosphotransferase) domain 1 170 418 - -
Mtr2g0020 428 MobiDBLite consensus disorder prediction 41 65 - -
Mtr2g0020 428 CDD STKc_GSK3 85 377 IPR039192 -
Mtr2g0020 428 Pfam Protein kinase domain 92 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g0020 428 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 425 - -
Mtr2g0020 428 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g0020 428 ProSitePatterns Protein kinases ATP-binding region signature. 96 120 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0020 Mtr-Chr2 249843 256170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0020 96 382 Core Cell Cycle Gene Families AT1G76540 35.452 1.37e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Mtr2g0020 Pkinase 9.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0020 K03083 - gmx:100799387 785.793