Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0011 ATGTGGTCGAATCGAAAGGAGAAGAGGAAGGCATTGAAGAAATTGAAGAGAAAGGAGAGAAGGAAAGAGATTGCTGAGAAGGAACGTTTGGAGGAAGAAGCTCGATTGAATGATCCTGAAGAGGAGAGAAAGAGGATACTCTTGGAGCAGCAAGAGGCGGAGAGAATCGAAAGGGATAGAATCGCTTTCGAAGAGAGGGAGAAAGCTTGGATTATCAAACAACAACAACAACGAGACCTAGAAGAAGAACAACAACAACTATCTCAACGAGACCTAGAACAACATGAATCAGAATTAGAAGAAGAAGAAGAAGAAGACGTTGATGATGACGACGATGGTCGTCCGGAGATTATTTGGCTAGGAAATGAAATTATCATACAAAAGAAGAACCCCAATCCCCTCCTTCTCCTCCACAACCACAACCACCACCACCACCACCACCACCACCAGGAGCAGCATGAGCATCATGATAATAGACCTACATCCAATCCCTTTCCCCCGGAATCTCCCTCTCAACCTCTGCACAATGTTGCTCAACAACCACCTAATTTCGGAACTGAACTGGATAAAGCTCACTGTCCCTTTCATCTTAAAACTGCAGCATGTCGATTTGGTGACCGATGTAGCAGGGTCCATTTCTACCCCGATAAGTCCTGCACCCTTCTCATCAAAAACATGTACAATGGTCCTGGACTTGCTTGGGAACAAGATGAAGGCCTTGAGTATACAGATGAGGAGGTTGAACGCTGTTTTGAAGAGTTTTATGAAGATGTTCACACAGAGTTCCTGAAGTTTGGTGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCATTTGCGAGGAAATGTCTACGTACAGTATAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTCGCTGGTAAACAGGTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGCGGAGACTATGAATGGGCAGATTCTGACAAACCACCCCCGAAATTTTGGGTAAAGGAGATGGTTGCTTTATTTGGTCATTCTGATAATTGTGAGATGTCAAGGGTCCATGGAAATTTTAGTGCGCTGAAGCACTCCAGCAATATCCTAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAGGGAGATGGGTCAATTATATGGTGGTCGTTCTAGTAGAAGAAGACAGGAAGATGAAAGAAAGCAGAGAACTCTTGATGAGGAATGGAATACCAACTATAAAGACAATCATAAAAGAAAATACAGGAACAAAACTTCTGATTCTGATTCTGACAAGGAAGGGTTAGAAGAGGTAGATAGGAAAAAGTATCATGAACACACTAGGAAAAGCTCATTTAATTGGAACAAGGATGACAATAGCAGAAGGCATGAAGAGTATTCTGATGTGGATAGGGTTACTATAAACAGGGACAATGAAAAGCCACATGATAGAAAAGGAAGGAACTCGCAAAAGTCGAACCGGGATAGTAGGGACTGGATTTATGAGGCTGGATGTGATGAGGATAGAGATGGAGATGGAAGAAAACACCATATTAGCCGAAGGAAAGGATCAAGACATCAGAGCAGGGACAACAGTAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGGCCATGAAGAGTATTCTGATGTGGATTGGGATACTATGAGTAGAGAGAATGAAAAGCAGCATGGCAGTAATGGAAGGAACTCACAAAAGTGGAACAGGGATAGTAGGTACCGGATTTATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAGGCACCATAGTAGCCAAAGGAAAGGATCGAGACATCGGAGCAGGGACAACAGTAATGTAGCCGATGAGTCTGAATCTGACAAAGATAGAGGACATGAAAAGTATTCTGATGTGGATTGGGATACTATGAGTAGGGACAATGAAAAGCAGCATGACAGCAAAGGAAAGAACTCACAAAAGAGGAATGGAGATAGTAAGTACCAGATTGATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAAGCACCTTAGTAGCCAAATGAAAGAATCTAGACATCAGAGTAGTGACAGCGGTTATGGAATTGATGAATCTGACAAAGATAAAGGAGAGATGGAAGCACAACATGGTTACTCTAGGAAAAGCTCGAGACACAAAAGATCTGGTCTTCAATACTAA 2295 0.4183 MWSNRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFEEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGRPEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNVAQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHGNFSALKHSSNILETDSDRYHSRRSRSREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDSGYGIDESDKDKGEMEAQHGYSRKSSRHKRSGLQY* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0011 764 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 5 658 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 135 185 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 74 114 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 562 604 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 404 764 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 404 420 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 96 113 - -
Mtr2g0011 764 SMART c3hfinal6 321 350 IPR000571 GO:0046872
Mtr2g0011 764 SMART c3hfinal6 188 214 IPR000571 GO:0046872
Mtr2g0011 764 MobiDBLite consensus disorder prediction 643 751 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 1 21 - -
Mtr2g0011 764 Coils Coil 73 112 - -
Mtr2g0011 764 SMART rrm2_1 249 315 IPR003954 GO:0003676
Mtr2g0011 764 MobiDBLite consensus disorder prediction 138 152 - -
Mtr2g0011 764 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 349 IPR000571 GO:0046872
Mtr2g0011 764 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 212 IPR000571 GO:0046872
Mtr2g0011 764 Coils Coil 5 37 - -
Mtr2g0011 764 ProSiteProfiles Zinc finger C3H1-type profile. 321 351 IPR000571 GO:0046872
Mtr2g0011 764 Gene3D - 218 317 IPR012677 -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 428 554 - -
Mtr2g0011 764 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 5 658 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 PRINTS U2 auxiliary factor small subunit signature 193 212 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 PRINTS U2 auxiliary factor small subunit signature 212 232 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 PRINTS U2 auxiliary factor small subunit signature 248 263 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 PRINTS U2 auxiliary factor small subunit signature 276 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 PRINTS U2 auxiliary factor small subunit signature 303 327 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 PRINTS U2 auxiliary factor small subunit signature 341 353 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mtr2g0011 764 MobiDBLite consensus disorder prediction 74 95 - -
Mtr2g0011 764 MobiDBLite consensus disorder prediction 612 632 - -
Mtr2g0011 764 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 319 IPR000504 GO:0003723
Mtr2g0011 764 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Mtr2g0011 764 SUPERFAMILY RNA-binding domain, RBD 251 319 IPR035979 GO:0003676
Mtr2g0011 764 CDD RRM_U2AFBPL 220 318 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr2g0011 zf-CCCH 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0011 K24273 - cam:101495256 895.575