Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g0004 ATGGCTTCAAATCACATGTCAGCTGTTACAAGCCGTGCAGGGTCAACTAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTGTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCCTCTAAAATATTGTGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTCTGCTACCTGAAACCGATCAAAGTGAGGTGACAAGCCCAGACGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACGGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCACTGGACATGACTCAGCAGCCACCATGGCAAGAACTGGTTGCAACTGATTTGCATGGAAATGAGTGGCATTTTCGACATATTTTTCGCGGACAACCCAGGCGCCACTTACTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGCGACGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTCATATCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCCATTTCCACTGGAACGTTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAAGCTCGAAATCACAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCCGAGTGGCGATCGTTAAAGGTTCAATGGGATGAACCGTCATCAATTTTGCGTCCAGATAGAGTTTCTCCATGGGAGTTGGAGCCACTTGTATCTACCCCTCCAGCAAACTCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTATTCTACCTTCAACAATGACCGATTCTTCTCTGCAAGGCATATGGAAATCACCAGCTGACTCTCCACCTTTCCCTTATCGCGACCCTCAACATGGAAGAGACCTCTATCCATCACCAAGATTCAGCTCTACTGCGACTAGCTTTCTTGGTTTTGGTGGGAACAGCCCTGCTTCTAACAAGTCAATGTATTGGTCTAGTAGATTGGAAAACTCTACAGAACCTTTTTCACCTGTAGCACTTGAAGAATCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACTGCTCCTTTGTCAGGAAGGGTGGGGGATGATAGGTCTGTTCCGTCCTTGGATGTCGAGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCACAAAGCAGACAGATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTTGATTTAACACGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATTGAGGGTGAGCTCTGTGGAGCAACAAAAAAATGGCTGGTAGTTTACACTGACAATGAAGATGATATGATGATGGTTGGGGATGATCCGTGGCTTGAATTTTGTAGCGTTGTGAGGAAAATGTTCATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCGAAAATAGGTCTTCCGAGCAATGAAGAAGGTAAACCAAGCAAACTGGATTCTGAAGCAGTTGTCAATCCCGAGGACCGGTCATCTATTGTGGGGCCTGGTTGCTAA 2016 0.4534 MASNHMSAVTSRAGSTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRSRPPILPSTMTDSSLQGIWKSPADSPPFPYRDPQHGRDLYPSPRFSSTATSFLGFGGNSPASNKSMYWSSRLENSTEPFSPVALEESGEKRQGTGNGCRLFGIQLLENSNAEESLQTAPLSGRVGDDRSVPSLDVESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDMMMVGDDPWLEFCSVVRKMFIYTPEEVKKLSPKIGLPSNEEGKPSKLDSEAVVNPEDRSSIVGPGC* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g0004 671 MobiDBLite consensus disorder prediction 486 524 - -
Mtr2g0004 671 MobiDBLite consensus disorder prediction 354 415 - -
Mtr2g0004 671 MobiDBLite consensus disorder prediction 358 392 - -
Mtr2g0004 671 CDD B3_DNA 123 225 IPR003340 GO:0003677
Mtr2g0004 671 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Mtr2g0004 671 MobiDBLite consensus disorder prediction 637 671 - -
Mtr2g0004 671 Pfam AUX/IAA family 544 637 IPR033389 -
Mtr2g0004 671 Gene3D - 542 636 - -
Mtr2g0004 671 Gene3D - 122 227 IPR015300 -
Mtr2g0004 671 SMART B3_2 125 227 IPR003340 GO:0003677
Mtr2g0004 671 Gene3D - 288 360 - -
Mtr2g0004 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 633 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g0004 671 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g0004 671 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Mtr2g0004 671 MobiDBLite consensus disorder prediction 508 524 - -
Mtr2g0004 671 ProSiteProfiles PB1 domain profile. 547 640 IPR000270 GO:0005515
Mtr2g0004 671 SUPERFAMILY CAD & PB1 domains 549 624 - -
Mtr2g0004 671 PANTHER AUXIN RESPONSE FACTOR 1 17 633 - -
Mtr2g0004 671 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g0004 Mtr-Chr2 101322 112146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g0004 2 665 B3 DNA Binding Superfamily AT1G59750 72.305 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g0004 AUX_IAA 7.1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g0004 K14486 - gmx:100793224 1231.85