Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4506 ATGGACAAGTTGTGGAGCTTCTCATCAAGAAGCGGTGATATTGTTGACATTGGGAGTCAACAATGGGAAGAAGAAAAGGACAATCTCCACAAGCAATTAGATGATTTGATCCCTCTCCCACATGTTTTGGAAGATGTAGATTGTTTCCTCAACAACACAAAAACTACAAATTCAATTTCGAGGGAAGAAATTCCCAATTGCGTGGTTGTGTTGCATAAATCGTTAGAATCTATGATGGATAAATACAATAGAGGGCGTAGAGGTAGAAGAAGCAGGTTTGGGCAAGATCTAAATGACGACAATTTATTTCTAGATGCAGTGGATCGAATCCTCAAGTTGTCTACCACCATGAGTTTAAGTGGTTTCTTCTTAGATAAAACAAGCTCTGTCCTAGAAAAAGTAATGATTATTTTAGAGAATGACCTTTGTGCTATTCTACATCACCCCAAATCAAAAACTTTCAGACCAACGCCACCACCCGTGAAATCTTCGTCCTTTGGTTCCCTTCAACTTCAATTTGATTTGCAAGACGAGAGGGAATCTTTAAGGTCCAACAACCTAGTTGACGAGGATGACAAAGATGGAAACTTATTGCCGACTTTCTCAACAGAAGAAATTTTTGTCATGAACAAAATTGCCACCGTTATGATTAACGCCGGCTATCATACAGAGTGTTGCATGACCATTACTAATTTTAGGCGAAATGCTTTTAAAAATGTAATGCAAAAATTAGGATACACATGTGTAAGGATGGGGGATGTTTATAAAATGCAATGGGAATCACTAGAAGGAGAAATTTTGACATGGAACAAAGCATTTCGGCATTGCACTACCGTCCTCTTCAACATTGAACGAAAATTATACAATTCAATATTCCCAAATCAACCCTCTATATCTCATGGCATGTTTGGTGATCTTGCACGAGCTGTCATCATCAATTTTCTCAATTTTGCTCAAGCAGTGGTTTTAACCAAGCCATCATCAGAGAAATTGTTCAAATTCCTAGATATGTATGAGACCTTGAGGGATGACGTGGAACCTGTCATTACACTCATTAATGGTGATGGTTTAGAGCAATGTGCCAAGGATTTGGCATACGAGATGACTATGACAAAGCATGGAATAATAAAGGCTGTCGTTTCGATGTTTTATGATTTGGAAAACTCCATCAAGGGTGATAATGAAAGGATTCCCGTCCCATATGGAGCGGTTCATCCATTGACTCGTTATGTCATGAATTATCTTAAATATGCATGTGAATACAAAGTGACGTTGGAGCAAGTGTTTTACCAATATTGTTCAGATGATTATCTTGCTACTATAGGACACCATTATGTTGATGATAGTAATAATAATAAGGGTACATCCACATCCACCGCAGATATTCAAAACGAAGAAAACAACGATAAAACAAGGGATCAAAATTTAGATGGAGAGCCTAACAAATCACCTTTTGTAGTTCAATTGATGACAATTATGGACCTTTTAGATGAAAATACCGAAAGGAAGTCCAAGTTATATAGGGATATGGCTTTACGATGTGTTTTTCTAATGAACAATGGGAGATACATAGTGCAAAAGATTAAAGGGTGTGTTGATCTTCATGAGTCCATGGGTGATAACTGGTGTAGGAGGAGGCAAACAAGTTTGAAGTTCCACCATAAGAGTTATCAGAGAGAGACTTGGACTAAGGTGTTGCAGTGCCTTAACCCAGATGGCCTTCATCAACAAGGGAACAAGGTCTCTAAGCAGGTTTTGAGAGAGAGGTTTAAGTGTTTCAATTCCATGTTTGAAGATATCCACAAGACGCAAAGTAGTTGGATGGTGAGCGATGAACAACTTCAATCAGAGTTAAGAGTTTCAATATCTGCCTTGGTCATACCTGCGTATCGCTCCTTTATGGGAAGATTTAAACATCATCTAGAAACAGGAAGACATATTGACAAGTACATAAAGTATCATCCCGACGACATTGAGACATTGATTGACGATTTTTTTGTTGGAAATGTTACGTCCATGCCTCGAAGGAGGACATGA 2037 0.3834 MDKLWSFSSRSGDIVDIGSQQWEEEKDNLHKQLDDLIPLPHVLEDVDCFLNNTKTTNSISREEIPNCVVVLHKSLESMMDKYNRGRRGRRSRFGQDLNDDNLFLDAVDRILKLSTTMSLSGFFLDKTSSVLEKVMIILENDLCAILHHPKSKTFRPTPPPVKSSSFGSLQLQFDLQDERESLRSNNLVDEDDKDGNLLPTFSTEEIFVMNKIATVMINAGYHTECCMTITNFRRNAFKNVMQKLGYTCVRMGDVYKMQWESLEGEILTWNKAFRHCTTVLFNIERKLYNSIFPNQPSISHGMFGDLARAVIINFLNFAQAVVLTKPSSEKLFKFLDMYETLRDDVEPVITLINGDGLEQCAKDLAYEMTMTKHGIIKAVVSMFYDLENSIKGDNERIPVPYGAVHPLTRYVMNYLKYACEYKVTLEQVFYQYCSDDYLATIGHHYVDDSNNNKGTSTSTADIQNEENNDKTRDQNLDGEPNKSPFVVQLMTIMDLLDENTERKSKLYRDMALRCVFLMNNGRYIVQKIKGCVDLHESMGDNWCRRRQTSLKFHHKSYQRETWTKVLQCLNPDGLHQQGNKVSKQVLRERFKCFNSMFEDIHKTQSSWMVSDEQLQSELRVSISALVIPAYRSFMGRFKHHLETGRHIDKYIKYHPDDIETLIDDFFVGNVTSMPRRRT* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4506 678 SUPERFAMILY Cullin repeat-like 93 666 IPR016159 -
Mtr1g4506 678 Gene3D Exocyst complex component Exo70 89 676 - -
Mtr1g4506 678 Pfam Exo70 exocyst complex subunit 269 664 IPR046364 GO:0000145|GO:0005546|GO:0006887
Mtr1g4506 678 PANTHER EXOCYST COMPLEX PROTEIN EXO70 26 669 IPR004140 GO:0000145|GO:0006887
Mtr1g4506 678 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 26 669 - -
Mtr1g4506 678 MobiDBLite consensus disorder prediction 449 464 - -
Mtr1g4506 678 MobiDBLite consensus disorder prediction 449 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4506 Mtr-Chr1 56676955 56678991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4506 63 677 EXO70 exocyst subunit family AT5G13150 45.687 5.81e-177 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4506 K07195 - mtr:MTR_1g117090 1379.77