Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4504 ATGGCTGCTGCTGCTGCATTCAATGTTACTACAACACCGCCACTTTTCTCACTGTCAAATGTTGTTGCTCTGAACCCTAACCCTAGAAGAAGTATTTCCGTCGGGGTGGTTAGGTCCCGAGGTGGGGGTGTGAAACTAGCAGTAGCAGTACGACGACAAGTGAAAGTGAGGGCAGTGGAAAGTGGTAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCACAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTTGTATTCGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA 735 0.4639 MAAAAAFNVTTTPPLFSLSNVVALNPNPRRSISVGVVRSRGGGVKLAVAVRRQVKVRAVESGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPLKKVTISDCGELPIA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4504 244 SUPERFAMILY Cyclophilin-like 74 241 IPR029000 -
Mtr1g4504 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 IPR002130 GO:0000413|GO:0003755
Mtr1g4504 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 141 IPR002130 GO:0000413|GO:0003755
Mtr1g4504 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 187 IPR002130 GO:0000413|GO:0003755
Mtr1g4504 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 199 IPR002130 GO:0000413|GO:0003755
Mtr1g4504 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 215 IPR002130 GO:0000413|GO:0003755
Mtr1g4504 244 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 42 243 - -
Mtr1g4504 244 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 42 243 - -
Mtr1g4504 244 Gene3D - 63 243 IPR029000 -
Mtr1g4504 244 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 124 141 IPR020892 GO:0003755|GO:0006457
Mtr1g4504 244 CDD cyclophilin_ABH_like 77 239 - -
Mtr1g4504 244 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 240 IPR002130 GO:0000413|GO:0003755
Mtr1g4504 244 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 93 239 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4504 Mtr-Chr1 56644304 56649711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4504 94 235 U-box Gene Family AT5G67530 46.853 1.57e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4504 K03768 - gmx:100796688 352.058