Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4496 ATGTATCGTCCACCTTCCTCATCGGCTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCAGCACCTAGCTCTCTCCTCAACACCACGGTGGATGCCATCATAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCAGCAACAGCAGCACCACCACCAACAACAACAACAACAGCAGCAGCAGAGATCTTCTTACGAAGGTCAAGGTGGTGGCTTTGATGGATCCGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAACCACAATAACAATAACAATAACGCTGGAGGAGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGTTTTACCGGGGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGTTGTTGATTATGCATCAGCTGCTGCTGCTGCTGGAAATGGATCATTGCATACTAATAGTACCAATACCTGGGGTGGAGGAGGCCCTGATAATAACAACAACTCAAATTCCATAGTATTTTCTTCTTCTCAAACCCAAACTAATAATAATAGTAAGAAGCGTTCTAGTAGAACTGACCCCAATGATGATCCGGACCTTCTTCTACATTGCCTCAATGCGCTCGAAACTCAGTATAGTCTCCCACAAACTTCTCTCGAAATGGACCAGCTTATGCATAATATTCCCCAAGATTCTGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGTGCCACTCATCCTCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGACCTTGAGAATTGCACGTGCGGATGCAAACAAAGTACATAA 1020 0.4529 MYRPPSSSASSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGGSRLLPGTGQHYFSDDSTQQQQQHHHQQQQQQQQQRSSYEGQGGGFDGSALLRQKSSPAGFLNHLATLNHNNNNNNAGGGFTITRGNSRLKSELSFTGGGQECLSRISENVVDYASAAAAAGNGSLHTNSTNTWGGGGPDNNNNSNSIVFSSSQTQTNNNSKKRSSRTDPNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4496 339 MobiDBLite consensus disorder prediction 1 35 - -
Mtr1g4496 339 Pfam Helix-loop-helix DNA-binding domain 272 318 IPR011598 GO:0046983
Mtr1g4496 339 CDD bHLH_AtbHLH_like 272 324 IPR045239 -
Mtr1g4496 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Mtr1g4496 339 SMART finulus 273 323 IPR011598 GO:0046983
Mtr1g4496 339 MobiDBLite consensus disorder prediction 59 90 - -
Mtr1g4496 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 331 IPR036638 GO:0046983
Mtr1g4496 339 MobiDBLite consensus disorder prediction 171 224 - -
Mtr1g4496 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 332 - -
Mtr1g4496 339 MobiDBLite consensus disorder prediction 171 212 - -
Mtr1g4496 339 Gene3D - 268 337 IPR036638 GO:0046983
Mtr1g4496 339 PANTHER TRANSCRIPTION FACTOR BHLH129 27 332 - -
Mtr1g4496 339 MobiDBLite consensus disorder prediction 54 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4496 Mtr-Chr1 56560635 56564441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4496 99 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 52.419 1.27e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g4496 HLH 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4496 - - mtr:MTR_1g116790 553.903