Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4493 ATGATCAATGTTGGTAGCAGTCCTGCTATTCCACCAATTGGTAGAAATCCAAATGTTCCACAATCCTTCCCAGACGGTTCTTCTCCACCAGTTGCTAAGACCCGGTTGTGCAACAAGTTCAATACAGCTGAAGGTTGCAAATTTGGGGATAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCAACGGTCCCTGCATATGAAGATACTCGCGCCATGGGACAAATGCAAAGCAGCAGTGTTGGTGGGAGAATTGAGCCCCCACCTCCAGCTCATGGAGCTGCTGCCGGTTTTGGAGTCTCAGCCACTGCAACAGTTAGTATTAATGCTACCCTTGCTGGAGCTATCATTGGAAAAAATGATGTTAACTCCAAGCAAATCTGTCACATAACAGGTGCTAAACTTTCCATTAGGGAACATGATTCAGATCCTAACCTTAGAAATATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTCCATGACCTTATTCTAAATGTGAGTTCGGTCTCTGGACCTCCAGGAAAAAACATTACTTCACAGACTTCTGCCCCTGCAAACAACTTCAAGACCAAGCTGTGTGAAAACTTTACCAAAGGATCCTGCACTTTTGGGGAAAGGTGCCACTTTGCGCATGGAACAGATGAATTACGCAAGCCTGGAATGTGA 690 0.4594 MINVGSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRKPGM* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4493 229 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 21 228 - -
Mtr1g4493 229 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Mtr1g4493 229 SMART kh_6 102 172 IPR004087 GO:0003676
Mtr1g4493 229 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Mtr1g4493 229 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 175 IPR036612 GO:0003723
Mtr1g4493 229 CDD KH-I 105 168 - -
Mtr1g4493 229 SUPERFAMILY CCCH zinc finger 29 62 IPR036855 GO:0046872
Mtr1g4493 229 Pfam KH domain 106 168 IPR004088 GO:0003723
Mtr1g4493 229 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 21 228 - -
Mtr1g4493 229 Gene3D K Homology domain, type 1 98 191 IPR036612 GO:0003723
Mtr1g4493 229 SMART c3hfinal6 33 58 IPR000571 GO:0046872
Mtr1g4493 229 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Mtr1g4493 229 ProSiteProfiles Type-1 KH domain profile. 103 167 - -
Mtr1g4493 229 Gene3D - 192 226 - -
Mtr1g4493 229 Gene3D - 26 63 - -
Mtr1g4493 229 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g4493 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Mtr1g4493 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 220 IPR000571 GO:0046872
Mtr1g4493 229 SUPERFAMILY CCCH zinc finger 195 226 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4493 Mtr-Chr1 56516841 56517757 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g4493 KH_1 4.2e-09 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4493 - - mtr:MTR_1g116940 465.307