Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4491 ATGCTTTCAAATTGGAGGATAAATGGAAGCTATGAAAGTTCAGAATCTACTAAGATAAATTATGGTGTGAAACGTAGGAGGTATGAAGTAGAGGATGTTGCAGGGTGTGAAAAGTTGAAAGGGGTTGTGCCTCAACAAAATGGACATTGGGGTGCACAAATATATGCAAATCACCAAAGAATATGGTTAGGGACATTCAAATCTGAAAGAGATGCTGCCATGGCTTACGACAGCGCCACCATTAAGCTCAGAAGCAGAGAAAGCCATAGAAACTTTGCATGGAATAACCAAACAGTTCAAGAACCTATGTTTCAAAGTCAATATAGCATGGAAACAATTATGATCATGATTAGAAATGGAACATACCCCTCTAATTTTGCAACAACATTTCTTAGAAATAATGAAAGGCGCCAAGGTGCAGGCAAAGAAGGTGTTGTTATAGGGGTGAAGGATGAGGAACAATTTTCTTGCACACAACTACTTTTTCAAAAAGAATTAACACCAAGTGATGTTGGTAAACTCAATAGGCTTGTCGTCCCGAAAAAACATGCAGTTACCTATTTTCCTTTGGTTTGTGGCAATGACGTGGAAGTTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTTCGATATTGCTATTGGAAGAGCAGCCAGAGCTATGTGTTCACTAGAGGATGGAATCGGTTTGTGAAGGATAAGAAATTGAAGGCCAAAGACACCATTGTATTTTATAGGTGTGAACCTATAAATTTGACAAATAATAACGGAGAGAGACTGCCGTTGTCATTAATTGATGTAATCTACAGTGATATTGATGGTAATAATAAGAAAATACATTCTTTTGAAGATGCCAAACATGGAGGCTTAAGGCTCTTTGGCGTAAGTATCAGCTGA 897 0.3802 MLSNWRINGSYESSESTKINYGVKRRRYEVEDVAGCEKLKGVVPQQNGHWGAQIYANHQRIWLGTFKSERDAAMAYDSATIKLRSRESHRNFAWNNQTVQEPMFQSQYSMETIMIMIRNGTYPSNFATTFLRNNERRQGAGKEGVVIGVKDEEQFSCTQLLFQKELTPSDVGKLNRLVVPKKHAVTYFPLVCGNDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYRCEPINLTNNNGERLPLSLIDVIYSDIDGNNKKIHSFEDAKHGGLRLFGVSIS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4491 298 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 279 IPR044800 GO:0003700
Mtr1g4491 298 SMART B3_2 162 268 IPR003340 GO:0003677
Mtr1g4491 298 ProSiteProfiles AP2/ERF domain profile. 38 93 IPR001471 GO:0003700|GO:0006355
Mtr1g4491 298 SMART rav1_2 38 99 IPR001471 GO:0003700|GO:0006355
Mtr1g4491 298 Gene3D - 156 259 IPR015300 -
Mtr1g4491 298 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Mtr1g4491 298 CDD B3_DNA 161 246 IPR003340 GO:0003677
Mtr1g4491 298 CDD AP2 38 95 IPR001471 GO:0003700|GO:0006355
Mtr1g4491 298 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 9 279 - -
Mtr1g4491 298 ProSiteProfiles B3 DNA-binding domain profile. 162 268 IPR003340 GO:0003677
Mtr1g4491 298 Gene3D AP2/ERF domain 38 94 IPR036955 GO:0003700|GO:0006355
Mtr1g4491 298 SUPERFAMILY DNA-binding pseudobarrel domain 160 249 IPR015300 -
Mtr1g4491 298 Pfam B3 DNA binding domain 162 246 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4491 Mtr-Chr1 56511537 56512433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4491 33 297 RAV Transcription Factor Family AT1G51120 49.051 1.43e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g4491 B3 4.2e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4491 K09287 - gmx:102660503 355.14