Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4462 ATGGCATCAACATCTTGTTTTAGTAAGAGTCCATTACCCATGAAAGAGACAGCTTTGAGCCATGGTGAATATCCTCCACCTATGGCAACTTATGAGGAGGTTGTAGACAATCCCAAGCTCTTCATACTTTGCTTGGAGAAGCTCCACACTCTAATGGGCACCAAGTTCATGATTCCTGTTATTGGGGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGTGGGTTTGAAAAAATCATTAAAGATAGAAAATGGAAAGAAGTAACTTTAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTGACTGGACCAACACAACTTCCGATGTTTTGCAGAGTCAATCATCCATCCCAGCTCCTGCTCCAAAGATGCAGTTTTCGCATCCTTCACCCCAAGTTCAACCAGCTGTCTTTCAACAGTTAAAAGTTAATTCTGCACCGCCCGAAGCAATGGGATCATCTTCGGCAGGATCTCAGGTTGTCGGGGTCATTGATGGGAAATTTGATAGTGGCTATCTAGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTACTTTATCAAGCTCCACAAAATCCTGTGCTGCCAGCATCCCACCATAGTGTTCCTGCTAATAACAACAACGTGACCGCCTCTGTCGGTGTCCATCGTCGCCGACGCAGGAAGAAATCAGAGATGAAAAAGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAACATCCAAGGCTAAAACCTCTTCACCGAGGGAAGGACCGAGAAATTAGTAGGACCATTGGTGAACTCTGGAACAAGTTACCTGAATCAGAAAAAGCAGTTTATCAAGATAAAGCCGTGAAGGACAAAGAGAGGTACATAACAGAAATGGAGTATTACCGTGAGAAGCTGAAGAATGATGAAGTCATCAGTGATGCTGTGCCACTTCGACAGCGACTTCCTGAACCAGATACTGACATGTTGAATGCTGAGGCAGACTCTCTTCAAACTCCGGAGCAGAGTAGTTTGGACGGAAGTGATGACTATGAAGATGATAAGGCGAAGGAGAAAGACTTTAGTGTGGATTCATTGCCTGTTATAGGACTTGGTGCTGAATCTATGGATTCAGTAGAGAGATCGTCCAAGTTGGGTTTATGA 1248 0.4319 MASTSCFSKSPLPMKETALSHGEYPPPMATYEEVVDNPKLFILCLEKLHTLMGTKFMIPVIGGRELDLHRLFVEVTSRGGFEKIIKDRKWKEVTLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARDWTNTTSDVLQSQSSIPAPAPKMQFSHPSPQVQPAVFQQLKVNSAPPEAMGSSSAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSVPANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHPRLKPLHRGKDREISRTIGELWNKLPESEKAVYQDKAVKDKERYITEMEYYREKLKNDEVISDAVPLRQRLPEPDTDMLNAEADSLQTPEQSSLDGSDDYEDDKAKEKDFSVDSLPVIGLGAESMDSVERSSKLGL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4462 415 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Mtr1g4462 415 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 331 IPR009071 -
Mtr1g4462 415 SMART bright_3 36 127 IPR001606 GO:0003677
Mtr1g4462 415 SMART ARID_2 32 122 - -
Mtr1g4462 415 SUPERFAMILY ARID-like 34 132 IPR036431 GO:0003677
Mtr1g4462 415 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 390 - -
Mtr1g4462 415 SUPERFAMILY HMG-box 252 338 IPR036910 -
Mtr1g4462 415 Gene3D High mobility group box domain 248 344 IPR036910 -
Mtr1g4462 415 Gene3D - 29 141 IPR036431 GO:0003677
Mtr1g4462 415 MobiDBLite consensus disorder prediction 227 243 - -
Mtr1g4462 415 CDD HMGB-UBF_HMG-box 264 328 - -
Mtr1g4462 415 SMART hmgende2 263 332 IPR009071 -
Mtr1g4462 415 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 390 - -
Mtr1g4462 415 MobiDBLite consensus disorder prediction 345 387 - -
Mtr1g4462 415 MobiDBLite consensus disorder prediction 244 258 - -
Mtr1g4462 415 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Mtr1g4462 415 MobiDBLite consensus disorder prediction 227 272 - -
Mtr1g4462 415 Pfam HMG (high mobility group) box 264 331 IPR009071 -
Mtr1g4462 415 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4462 Mtr-Chr1 56220829 56227089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4462 1 363 ARID Transcription Factor Family AT1G04880 60.800 4.39e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr1g4462 ARID 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4462 - - gmx:100807028 591.652