Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g4462 | ATGGCATCAACATCTTGTTTTAGTAAGAGTCCATTACCCATGAAAGAGACAGCTTTGAGCCATGGTGAATATCCTCCACCTATGGCAACTTATGAGGAGGTTGTAGACAATCCCAAGCTCTTCATACTTTGCTTGGAGAAGCTCCACACTCTAATGGGCACCAAGTTCATGATTCCTGTTATTGGGGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGTGGGTTTGAAAAAATCATTAAAGATAGAAAATGGAAAGAAGTAACTTTAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTGACTGGACCAACACAACTTCCGATGTTTTGCAGAGTCAATCATCCATCCCAGCTCCTGCTCCAAAGATGCAGTTTTCGCATCCTTCACCCCAAGTTCAACCAGCTGTCTTTCAACAGTTAAAAGTTAATTCTGCACCGCCCGAAGCAATGGGATCATCTTCGGCAGGATCTCAGGTTGTCGGGGTCATTGATGGGAAATTTGATAGTGGCTATCTAGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTACTTTATCAAGCTCCACAAAATCCTGTGCTGCCAGCATCCCACCATAGTGTTCCTGCTAATAACAACAACGTGACCGCCTCTGTCGGTGTCCATCGTCGCCGACGCAGGAAGAAATCAGAGATGAAAAAGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAACATCCAAGGCTAAAACCTCTTCACCGAGGGAAGGACCGAGAAATTAGTAGGACCATTGGTGAACTCTGGAACAAGTTACCTGAATCAGAAAAAGCAGTTTATCAAGATAAAGCCGTGAAGGACAAAGAGAGGTACATAACAGAAATGGAGTATTACCGTGAGAAGCTGAAGAATGATGAAGTCATCAGTGATGCTGTGCCACTTCGACAGCGACTTCCTGAACCAGATACTGACATGTTGAATGCTGAGGCAGACTCTCTTCAAACTCCGGAGCAGAGTAGTTTGGACGGAAGTGATGACTATGAAGATGATAAGGCGAAGGAGAAAGACTTTAGTGTGGATTCATTGCCTGTTATAGGACTTGGTGCTGAATCTATGGATTCAGTAGAGAGATCGTCCAAGTTGGGTTTATGA | 1248 | 0.4319 | MASTSCFSKSPLPMKETALSHGEYPPPMATYEEVVDNPKLFILCLEKLHTLMGTKFMIPVIGGRELDLHRLFVEVTSRGGFEKIIKDRKWKEVTLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARDWTNTTSDVLQSQSSIPAPAPKMQFSHPSPQVQPAVFQQLKVNSAPPEAMGSSSAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSVPANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHPRLKPLHRGKDREISRTIGELWNKLPESEKAVYQDKAVKDKERYITEMEYYREKLKNDEVISDAVPLRQRLPEPDTDMLNAEADSLQTPEQSSLDGSDDYEDDKAKEKDFSVDSLPVIGLGAESMDSVERSSKLGL* | 416 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g4462 | 415 | Pfam | ARID/BRIGHT DNA binding domain | 39 | 122 | IPR001606 | GO:0003677 | |
Mtr1g4462 | 415 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 264 | 331 | IPR009071 | - | |
Mtr1g4462 | 415 | SMART | bright_3 | 36 | 127 | IPR001606 | GO:0003677 | |
Mtr1g4462 | 415 | SMART | ARID_2 | 32 | 122 | - | - | |
Mtr1g4462 | 415 | SUPERFAMILY | ARID-like | 34 | 132 | IPR036431 | GO:0003677 | |
Mtr1g4462 | 415 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 3 | 390 | - | - | |
Mtr1g4462 | 415 | SUPERFAMILY | HMG-box | 252 | 338 | IPR036910 | - | |
Mtr1g4462 | 415 | Gene3D | High mobility group box domain | 248 | 344 | IPR036910 | - | |
Mtr1g4462 | 415 | Gene3D | - | 29 | 141 | IPR036431 | GO:0003677 | |
Mtr1g4462 | 415 | MobiDBLite | consensus disorder prediction | 227 | 243 | - | - | |
Mtr1g4462 | 415 | CDD | HMGB-UBF_HMG-box | 264 | 328 | - | - | |
Mtr1g4462 | 415 | SMART | hmgende2 | 263 | 332 | IPR009071 | - | |
Mtr1g4462 | 415 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 3 | 390 | - | - | |
Mtr1g4462 | 415 | MobiDBLite | consensus disorder prediction | 345 | 387 | - | - | |
Mtr1g4462 | 415 | MobiDBLite | consensus disorder prediction | 244 | 258 | - | - | |
Mtr1g4462 | 415 | CDD | ARID_HMGB9-like | 37 | 122 | IPR045303 | GO:0003677 | |
Mtr1g4462 | 415 | MobiDBLite | consensus disorder prediction | 227 | 272 | - | - | |
Mtr1g4462 | 415 | Pfam | HMG (high mobility group) box | 264 | 331 | IPR009071 | - | |
Mtr1g4462 | 415 | ProSiteProfiles | ARID domain profile. | 35 | 126 | IPR001606 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g4462 | Mtr-Chr1 | 56220829 | 56227089 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g4462 | 1 | 363 | ARID Transcription Factor Family | AT1G04880 | 60.800 | 4.39e-136 | 395 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Mtr1g4462 | ARID | 1.2e-17 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g4462 | - | - | gmx:100807028 | 591.652 |