Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4449 ATGGCTCTGCCTAAGTTGAAGCAAGACATGATATATGAAATGGAATTTCAGCAAAAGGGAAATGACATTCTTTCTTTGGAATGGCTGTCCGATATTGTGGATGATTCTCGTGATGAGAATATTACAATGAAAAAAGTGGAGCAACATCCATCATCATCAGTCAACAAGGAGGATTTTGTGCTCCCTAAAAGCAATAGTTCACCCACTTGTGAAAAGACCACAGTGAGACGTACACGCTCCAAGCGTCCACGTCTTGCAACCTTCAGCTCCCATCATTCAACCATGCAACTCATTTCTTCCACTTCCTCTTTTGTAGGGGAGAATATGCAGGATAGTGTTATTTCCAACAAGGGAGCGTCTACAGAAAAATTTCCTGACTCTCAAATTGCAGCAAAGAAACAAAAGCTTTCTTCTGGAGAGTCCAAGAAGAACAAGAAAACAAAGGCGCCACTTCTTGCTGCTCTAGACCATAATGCTTTGGGACTTGTCCGGCAATGCACGCATTGTGAGGCGACGAAGACTCCACAATGGAGGACAGGGCCAGAGGGGCCGAAAACACTCTGCAATGCTTGCGGTGTTCGGTACAAGTCAGGCCGACTCTGCCCTGAATACCGGCCTGCGGCTAGCTCAACTTTTTCTCCGGATCTTCACTCTAACTCACATAAGAAGATCCTTGAAATGAGAGTGATGAGACGCAAGGATAATAAGAATTCTGGTATTCTTGCCTTGGAATACATGTGA 741 0.4467 MALPKLKQDMIYEMEFQQKGNDILSLEWLSDIVDDSRDENITMKKVEQHPSSSVNKEDFVLPKSNSSPTCEKTTVRRTRSKRPRLATFSSHHSTMQLISSTSSFVGENMQDSVISNKGASTEKFPDSQIAAKKQKLSSGESKKNKKTKAPLLAALDHNALGLVRQCTHCEATKTPQWRTGPEGPKTLCNACGVRYKSGRLCPEYRPAASSTFSPDLHSNSHKKILEMRVMRRKDNKNSGILALEYM* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4449 246 MobiDBLite consensus disorder prediction 117 147 - -
Mtr1g4449 246 MobiDBLite consensus disorder prediction 47 71 - -
Mtr1g4449 246 CDD ZnF_GATA 165 214 IPR000679 GO:0006355|GO:0043565
Mtr1g4449 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 223 - -
Mtr1g4449 246 SMART GATA_3 160 210 IPR000679 GO:0006355|GO:0043565
Mtr1g4449 246 ProSitePatterns GATA-type zinc finger domain. 166 191 IPR000679 GO:0006355|GO:0043565
Mtr1g4449 246 Gene3D - 163 241 IPR013088 GO:0006355|GO:0008270
Mtr1g4449 246 PANTHER GATA TRANSCRIPTION FACTOR 1 150 - -
Mtr1g4449 246 PANTHER GATA TRANSCRIPTION FACTOR 150 246 - -
Mtr1g4449 246 Pfam GATA zinc finger 166 199 IPR000679 GO:0006355|GO:0043565
Mtr1g4449 246 ProSiteProfiles GATA-type zinc finger domain profile. 164 196 IPR000679 GO:0006355|GO:0043565
Mtr1g4449 246 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 150 - -
Mtr1g4449 246 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 150 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4449 Mtr-Chr1 56126968 56129423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4449 158 236 C2C2-Gata Transcription Factor Family AT1G08010 72.152 8.45e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr1g4449 GATA 1.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4449 - - mtr:MTR_1g116010 496.508