Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4444 ATGTCGGCTCGCATTGTAGCTGAAGATGTTCCCGATTCTTATTTCGATTTTATGGAAATGGACGACTTCACGCGCCGCCGTGACGCCGGTGATATGCCGACTCTCGGACAGCTTCTCAAACACGTTGGAGATGTAAGGAAAGAAGCTATTGGTGATGGCAGTGAGACGCCGGTGCACCACACTCTTGACATCAACGGAATGGAGGTTCGATCACTTCCTTTCGTTCTTTCCTTCAACAACCTTACCTATAGTGTTAAGATACGTAATAAAATGAGTTTCACCGACTTATTCTCTCGCCGCCGTGCATCTCCGGTCGCTGAGACGCCTGCACTCGGGGAGACTGCGTTTTCACGGAGTAAGATTCTGCTCAACGAAATCTCCGGTGAAGCACGTGACGGTGAGATCATGGCTTTCCTCGGAGCCAGTGGCTCTGGTAAATCAACTTTGATTGATGCTCTAGCAAACAGGATCGCAAAAGGTAAATTGAAAGGAACTGTGAAGCTCAACGGAGAGTCGGTTGAGTCTCGTCTTCTGAAGGTGATTTCTGCCTATGTGATGCAAGATGATCTCCTCTTTCCAATGCTCACAGTTGAAGAAACTCTCACCTTTGCAGCTGAATTCCGATTACCGCGATCACTCTCAAAATCAAAGAAAAACGCTCGTGTTCAAGCTTTGATTGATCAACTAGGACTCCGCAACGCAGCGAAAACAGTTATCGGAGACGAAGGTCACCGTGGAGTCTCTGGTGGAGAAAGGCGTCGAGTTTCAATCGGAATCGACATAATCCATGATCCAATAGTGCTCTTCCTAGATGAACCAACTTCAGGATTGGATTCCACAAGTGCTTTCATGGTTGTTAAAGTACTTCAGAGAATTGCACAAAGTGGAAGCATCGTGATCATGTCAATTCATCAACCAAGTTACAGAATCTTAGGTCTTCTTGATCGTATGATCTTCTTATCGCGTGGACAGACAGTTTACAGCGGTTCACCATCGCAGTTACCTTCATACTTTGCAGAATTCGGCCATCCCATACCTGAAGGTGATAACCGAACAGAATTCGCGTTAGACCTGATTCGCGAATTGGAAGGTTCACCAGGAGGAACAAAAAGCTTAGTTGAATTCAACAAATCATGGCAAAGCATGACCAAACTTCACAACAACAATGACATTTCACAAAATGCAACACCGTCGTTATCTTTGAAGGAAGCTATCAGCGCTAGCATTTCCAGAGGGAAATTAGTTTCTGGCGCAACAGCTGCAACTAATTCAAATGCAATAGCCACATCACCATCTTCTTCATCATCCTCAATCGTGCCTACTTATGCAAATCCGTTTTGGATTGAGTTATTAACACTTTCGAAGCGTTCAATAACTAATTCAAGGCGAATGCCTGAACTATTTGGGATAAGATTGGGCGCTGTTATGGTAACTGGTTTCATTCTTGCAACAATGTTTTGGCAACTTGACAACAGTCCAAAAGGTGTACAAGAAAGGCTTGGATTCTTTGCTTTTGCAATGTCAACTACTTTCTACACCACTGCAGATGCACTACCAGTTTTCATTCAAGAACGGTTCATTTTCATGAGAGAAACATCTCACAACGCTTACAGAAGATGGTCTTACGTGATTTCGCATGCTATTGTTGCTTTGCCTGCTTTGTTGTTTCTATCACTTGCTTTTGCCTGCATAACATTTTGGGCTGTGGGGCTTGATGGTGGATTCTCAGGTTTTTTGTTTTACTTTGTTATCATTCTTGCTTCATTTTGGGCAGGGAACTCGTTCGTTTCGTTTCTTTCAGGTGTGGTTCCTCATGTGATGTTGGGTTACACTATCGTGGTTGCAATTCTTGCATATTTCTTATTGTTCAGTGGGTTCTTTATCAATAGGGATAGAATCCCTGGGTATTGGATTTGGTTCCATTACATGTCATTGGTTAAGTACCCATATGAAGCAGTTCTGCAGAACGAGTTTAGTGATGCAGCTAAATGTTTTGTGAGGGGGGTGCAGATTTTTGATAACTCACCTCTTGCTTCAGTGTCTGATGCATTGAAGTTGAAATTGTTGGACAGTATGAGTGATACATTAGGAATGAAAATCACAGCGTCTACTTGTTTGACAACTGGTACTGATTTGTTGAAGCAAAATGCGGTGACGGATTTGAGCAAGTGGAATTGTTTGTGGGTAACTGTGGCTTGGGGTTTCTTCTTCAGGATTCTATTCTATTTGTCTTTGTTGCTGGGTAGCAAGAACAAGAGGAGTTGA 2265 0.4331 MSARIVAEDVPDSYFDFMEMDDFTRRRDAGDMPTLGQLLKHVGDVRKEAIGDGSETPVHHTLDINGMEVRSLPFVLSFNNLTYSVKIRNKMSFTDLFSRRRASPVAETPALGETAFSRSKILLNEISGEARDGEIMAFLGASGSGKSTLIDALANRIAKGKLKGTVKLNGESVESRLLKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKNARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPSYFAEFGHPIPEGDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKLHNNNDISQNATPSLSLKEAISASISRGKLVSGATAATNSNAIATSPSSSSSSIVPTYANPFWIELLTLSKRSITNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFIQERFIFMRETSHNAYRRWSYVISHAIVALPALLFLSLAFACITFWAVGLDGGFSGFLFYFVIILASFWAGNSFVSFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPGYWIWFHYMSLVKYPYEAVLQNEFSDAAKCFVRGVQIFDNSPLASVSDALKLKLLDSMSDTLGMKITASTCLTTGTDLLKQNAVTDLSKWNCLWVTVAWGFFFRILFYLSLLLGSKNKRS* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4444 754 Pfam ABC-2 type transporter 304 394 IPR043926 GO:0140359
Mtr1g4444 754 Pfam ABC transporter 123 275 IPR003439 GO:0005524
Mtr1g4444 754 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 34 747 - -
Mtr1g4444 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 339 IPR027417 -
Mtr1g4444 754 SMART AAA_5 132 324 IPR003593 -
Mtr1g4444 754 ProSitePatterns ABC transporters family signature. 247 261 IPR017871 GO:0005524
Mtr1g4444 754 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 91 347 IPR003439 GO:0005524
Mtr1g4444 754 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 34 747 - -
Mtr1g4444 754 Gene3D - 113 340 IPR027417 -
Mtr1g4444 754 Pfam ABC-2 type transporter 450 658 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4444 Mtr-Chr1 56080822 56083608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4444 117 334 Calmodulin-binding Proteins AT2G36910 28.761 2.23e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4444 K05681 - gmx:100803658 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4444 1 56080822 56083608 Mtr1g4444 1 56080822 56083608 ECH