Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4434 ATGACAACCCCTCCTGATACAACTTCGCCACCGTCAAGATCTCGTAGCTTCCGTGCACCTTCCTTGGACGACGGCCGCATTCTCGTCGATTATAACATCCAGAACGAATCCACTCTCCACCTTGCTCTTCGTCTTCGTGGTGGAGCTAAGAAGCTTTCTGGAACTGAAGCTGAAACTTTTGCTGCTGAAGAAGTGGATGATGTTGATGGAGAAGATGAAGATGGTGTTGTTGAACGTTTAGAATTTGATGAACGTTTTGTAACTTTTCTTGTTCCAACACCAACTGGTATGTTCCTTAAAGCACCACCTTTTGCCCAATATCTTTTGCAATGTTCTTGTTCTGGAAAATTTGGTTTCATGGGTTGA 366 0.4399 MTTPPDTTSPPSRSRSFRAPSLDDGRILVDYNIQNESTLHLALRLRGGAKKLSGTEAETFAAEEVDDVDGEDEDGVVERLEFDERFVTFLVPTPTGMFLKAPPFAQYLLQCSCSGKFGFMG* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4434 121 MobiDBLite consensus disorder prediction 1 16 - -
Mtr1g4434 121 Gene3D - 9 74 - -
Mtr1g4434 121 ProSiteProfiles Ubiquitin domain profile. 17 48 IPR000626 GO:0005515
Mtr1g4434 121 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g4434 121 SUPERFAMILY Ubiquitin-like 21 58 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4434 Mtr-Chr1 55982166 55982592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4434 10 49 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 65.854 7.93e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4434 K02977 - oeu:111410419 56.9954