Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4430 ATGATGCAGCCATACGGAGATGCAGATTCCAATTTGAGGTCCATTGCCGGTCGTGCTGAGGGTTTCGGTCGCCTCGCCATCGGTGGTCTCCACGGTGGTCTCTATTTCGTTACCTCCCTTTCAGATGATGGTCCTGGTTCTCTTCGCGAAGGATGTCGTAGAAAGGAGCCGCTATGGATTGTTTTTGAAGTTTCCGGTACAATTAATCTTTCATCATACCTGAGTGTGTCCTCTCATAAGACAATAGATGGAAGAGGTCAGAGGATTAAATTGACTGGGAAAGGCTTAAGGCTGAAAGAATGTGATAACATAATTGTATGCAACCTTGAGTTTGAGGGGGGCAGAGGTCATGATGTTGATGGGATTCAAATCAAACCTAATTCTAGGAATATTTGGATTGACCGTTGCAGCCTCCGAGATTATGATGACGGCCTTATAGACATCACAAGACAAAGCACAGATATCACTATATCTAGATGTTATTTTGCACAACATGACAAGACCATGCTAATTGGAGCTGACCCAACACATGTTGGTGATAGATGCATCCGGGTGACGATTCACCATTGTTTTTTTGATGGAACACGGCAAAGACACCCTCGTGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCAGTTTGTGCTAGTGTTGAGTCCCAGATATACTCCCAATGCAACATATATGAGGCAGGAGATAAGAAAAAGACTTTTGAATTTTATACGGAGAAGGCGGCAGACAAAGAAGAGCAGAAGTCCGGCTTCATAACATCTGAAGGAGATATGTTTCTGAATGGTGCTCAACCATTATGCTTGCCAATAGAATCTAAAGGAGAATCCATGTTCCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACACATTCTCTTAGAGAGGTTGCCCAGTTTTGTACAGGTTGGCAGTCTATTTGTAGGCCAGATGGCCAATAG 984 0.4319 MMQPYGDADSNLRSIAGRAEGFGRLAIGGLHGGLYFVTSLSDDGPGSLREGCRRKEPLWIVFEVSGTINLSSYLSVSSHKTIDGRGQRIKLTGKGLRLKECDNIIVCNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGDKKKTFEFYTEKAADKEEQKSGFITSEGDMFLNGAQPLCLPIESKGESMFHPSEYYPTWTMEAATHSLREVAQFCTGWQSICRPDGQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4430 327 SUPERFAMILY Pectin lyase-like 16 277 IPR011050 -
Mtr1g4430 327 PANTHER PECTATE LYASE 18-RELATED 2 324 IPR045032 GO:0030570
Mtr1g4430 327 PANTHER PECTATE LYASE 2 324 - -
Mtr1g4430 327 SMART amb_all 65 243 IPR002022 -
Mtr1g4430 327 Pfam Pectate lyase 73 236 IPR002022 -
Mtr1g4430 327 Gene3D - 4 315 IPR012334 -
Mtr1g4430 327 PRINTS Pollen allergen Amb family signature 18 35 IPR018082 -
Mtr1g4430 327 PRINTS Pollen allergen Amb family signature 198 217 IPR018082 -
Mtr1g4430 327 PRINTS Pollen allergen Amb family signature 220 239 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4430 Mtr-Chr1 55937516 55939768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4430 40 324 Polysaccharide Lyase AT3G55140 80.351 7.34e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4430 K01728 - gmx:100802068 607.446