Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4429 ATGGTCAAGGTTCATGAGTTGAGGCAGAAAAACAAAACTGATCTGTTGGCTCAGCTCAAAGATCTCAAAGCTGAACTTTCTTTGCTCCGAGTTGCTAAGGTCACTGGTGGTGCACCCAACAAGCTCTCCAAAATTAAGGTGGTGAGGTTGTCGATTGCTCAGGTGTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCTTTGAGGGAAGTATACAAGAACAAGAAGTATTTGCCACTTGATCTTCGCCCAAAGAAGACCAGGGCCATTCGCAGAAGGCTCACCAAGCACCAGTCTTCGTTGAAGACCGAGAGGGAGAAGAAAAAGGAGACATATTTCCCAATGAGGAAATATGCTATCAAGGCATAA 366 0.4536 MVKVHELRQKNKTDLLAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQSSLKTEREKKKETYFPMRKYAIKA* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4429 121 TIGRFAM L29: ribosomal protein uL29 6 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr1g4429 121 Pfam Ribosomal L29 protein 6 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr1g4429 121 Hamap 50S ribosomal protein L29 [rpmC]. 2 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr1g4429 121 SUPERFAMILY Ribosomal protein L29 (L29p) 2 63 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mtr1g4429 121 Gene3D - 1 75 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mtr1g4429 121 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 2 120 - -
Mtr1g4429 121 Coils Coil 12 32 - -
Mtr1g4429 121 Gene3D - 76 121 - -
Mtr1g4429 121 PANTHER 60S RIBOSOMAL PROTEIN L35 2 120 IPR045059 GO:0000463|GO:0022625
Mtr1g4429 121 CDD Ribosomal_L29_HIP 6 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4429 Mtr-Chr1 55933398 55935374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4429 2 120 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 86.555 9.14e-70 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4429 K02918 - sind:105170374 218.779