Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4420 ATGAACTTGTTTGTTCTAGCACTTTTGATGATCTCAATCACCAATTTTCCATCATGTCTCTGTGAGAATGATGATATCCAACACACGAACTGCAACGACGCTTTTATCTGCGAAAGTAGCAACATCACAAATCTCAAGTATCCGTTCAGGGGAGGAAATAGAGGAAAGTATTGCGGTGTGAATGATGATCCTAATATGGAACTCACATGTGAGGACAGTGTCCCCAAGTTAACAACGGATGATTCTTTCTTGAAATACAGTATTCTTGAATGGGACAATTCAACACAGAAGCTCAGAGTTACTAGGGAAGATTACTCGAGAGATGATGTTTGTGTTCCTGTCGACAACATCACATTCAATAGCACTTTGTTTAAACTTTATGATGATGTCGCTAACGTGACTTTGTTTTACTATTGCCTTCTTACAACTGAAACTCTACCGAATACGTTTCACAGTGTTGAATGTAGTGATAATTCATCAGTTTTATACACCCTTGTTGATCCTTCTACAGCTACTTACTCGGACCTCTGTGATCCGATGGTTATTACTATCATGATTCCGATTTTGGAAACCCGAGCTGCACAACTTGGATCTGGCAATGGGACAATCAGTGATGTAATAAAAGATGGTTTTGATTTGAAATGGACAGGAGATTATGGAGAGTGTCAAAGGTGTGTTGTTTCTGGTGGTGCATGTGGGAATGATGGAGGAAGTGAATTCCAATGTTTCTGTAAGGATGGACCTCATACAACATCATGCATATCAGAAATTTCTCCAGCCTCAGAAAATTCTCCAGCCTCGGAAAATTATCCAGCCTCAGAAAATTCTCCAGCCTCAACAACAGTATTCTTCATTATTCTTATTATTATGGTTATTTGTCACCTTAAAAGGAGTACATCTGGACAACAAAGTATTTTCAGAAAGAAACGAAAACTTGTTGACCACAATGTCGAGGTTTTCATGCAAAGTTATGAATCATCTATGCCAAGAAGATATAGTTATAGAGAAATAAAAAGGATCACAAAATCTTTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTATACAAAGCAAGTTTACCTGATGGTCGTCAAGTGGCTGTTAAAGTAATAAACGAGTTAAAGGGGGATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACGTGAACATTGTGTCACTTTTAGGCTATTGTTATGAGGTGAACAAAAGAGCACTAATATATGAATTCATGCGCCAAGGATCATTGGATCAGTTCATCTATAAAAGTGGATTTTCTGAAGCTGTTTGTGATTTTAATTGGAACACTTTGTTCCAAATTGCAATTGGCATTGCTAAAGGACTAGAGTACTTGCATCAAGGATGTAGTTCAAGGATTTTGCATCTTGATATCAAACCTCAAAACATTATTTTGGATGAAGACTTTTGCCCAAAAATATCTGATTTCGGACTAGCAAAAATATGCCAAAGGAAGGATAGTGTTGTGTCAATACTTGGCACAAGAGGAACTATAGGATATATGGCGCCAGAAGTATATAGTAGAGCATTTGGTGGTGTTTCTTACAAATCTGATATATACAGTTATGGCATGTTGATTCTTGAAATGATTGGAGGAAGAAAGAACTATGACACTGGAGGGTCATGTACTTCAGAAATGTACTTTCCAGACTGGATTTATAAGGATCTTGAGCAAGGAAATACTCTTTCAAATTGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTATAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAAACCATCGGATAGACCACAGATGAATAAAGTAATAGAAATGTTGGAAGGGCCACTTTCATCAGTGCCATATCCTCCAAAGCCCGTCTTATGTTATCCTGAAACGCCACCACTAGAAATGTCAGACATGTCTTCATCCAATTTGGATGAGACGAATTCCATTACAATGTCAAAATAA 1980 0.3747 MNLFVLALLMISITNFPSCLCENDDIQHTNCNDAFICESSNITNLKYPFRGGNRGKYCGVNDDPNMELTCEDSVPKLTTDDSFLKYSILEWDNSTQKLRVTREDYSRDDVCVPVDNITFNSTLFKLYDDVANVTLFYYCLLTTETLPNTFHSVECSDNSSVLYTLVDPSTATYSDLCDPMVITIMIPILETRAAQLGSGNGTISDVIKDGFDLKWTGDYGECQRCVVSGGACGNDGGSEFQCFCKDGPHTTSCISEISPASENSPASENYPASENSPASTTVFFIILIIMVICHLKRSTSGQQSIFRKKRKLVDHNVEVFMQSYESSMPRRYSYREIKRITKSFRDKLGQGGYGVVYKASLPDGRQVAVKVINELKGDGEEFINEVASISRTSHVNIVSLLGYCYEVNKRALIYEFMRQGSLDQFIYKSGFSEAVCDFNWNTLFQIAIGIAKGLEYLHQGCSSRILHLDIKPQNIILDEDFCPKISDFGLAKICQRKDSVVSILGTRGTIGYMAPEVYSRAFGGVSYKSDIYSYGMLILEMIGGRKNYDTGGSCTSEMYFPDWIYKDLEQGNTLSNCLTISEEENDMVIKITLVSLWCIQTKPSDRPQMNKVIEMLEGPLSSVPYPPKPVLCYPETPPLEMSDMSSSNLDETNSITMSK* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4420 659 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4420 659 ProSiteProfiles Protein kinase domain profile. 342 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4420 659 MobiDBLite consensus disorder prediction 636 659 - -
Mtr1g4420 659 MobiDBLite consensus disorder prediction 640 659 - -
Mtr1g4420 659 SUPERFAMILY Protein kinase-like (PK-like) 318 616 IPR011009 -
Mtr1g4420 659 Pfam Wall-associated receptor kinase galacturonan-binding 31 101 IPR025287 GO:0030247
Mtr1g4420 659 Gene3D Transferase(Phosphotransferase) domain 1 417 623 - -
Mtr1g4420 659 Gene3D Phosphorylase Kinase; domain 1 315 416 - -
Mtr1g4420 659 PANTHER TYROSINE KINASE FAMILY PROTEIN 11 656 - -
Mtr1g4420 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Mtr1g4420 659 Pfam Wall-associated receptor kinase C-terminal 182 247 IPR032872 -
Mtr1g4420 659 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 656 IPR045874 GO:0004672
Mtr1g4420 659 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g4420 659 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4420 Mtr-Chr1 55877021 55881599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4420 17 648 Receptor kinase-like Gene Family AT5G38260 38.462 1.52e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr1g4420 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4420 - - mtr:MTR_1g115485 1334.32