Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4403 ATGAAGAGAGAAAGAGAAACTGATCATAACACTAATAGCATAACCATGGCTAAATACTTGATGTTACTTTCTGGTGGAAGTGATAAAATATTTGATCAAGTGAATTACTCTTCAAATTTCAACAACCGTGTGTTTGAGTGCAAGACATGTAAAAGACAATTTTCATCGTTTCAAGCGTTGGGAGGACACCGAGCGAGTCACAAGAAACCGAGGTTGATGGAGATGACTAGTGATGGTGATGATCATCATGGTTCAATACTTACATCAACGACGAAGGCTAAAACGCATGCATGTTCTATTTGTGGATTAGAATTTGGAATAGGACAAGCTTTGGGTGGTCACATGAGAAGACACAGAAGAACAGAATCATCAAAAGCTAATAACTCAAATGGAAACATGCATAATTTTATGACTACTACAACTACTAGTAGCAGCAATAGTGGTTGCAGTACAATTGATAATAGTACTAATACTGATTCAGCAAAGAGGAGCAAGGGAAACAGCAAGAGATTTTTGTTTCTGGATTTGAATTTTACACCTTTAGAGAATGATTTGAAGTTTTTAAAGGTTGGACAACCAACTCCTAATTTGGTGGATCGTTTCAATTCAATTCATTAA 618 0.3608 MKRERETDHNTNSITMAKYLMLLSGGSDKIFDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMTSDGDDHHGSILTSTTKAKTHACSICGLEFGIGQALGGHMRRHRRTESSKANNSNGNMHNFMTTTTTSSSNSGCSTIDNSTNTDSAKRSKGNSKRFLFLDLNFTPLENDLKFLKVGQPTPNLVDRFNSIH* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4403 205 MobiDBLite consensus disorder prediction 139 164 - -
Mtr1g4403 205 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Mtr1g4403 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Mtr1g4403 205 Gene3D Classic Zinc Finger 42 118 - -
Mtr1g4403 205 SMART c2h2final6 45 67 IPR013087 -
Mtr1g4403 205 SMART c2h2final6 96 118 IPR013087 -
Mtr1g4403 205 MobiDBLite consensus disorder prediction 139 162 - -
Mtr1g4403 205 SUPERFAMILY beta-beta-alpha zinc fingers 43 118 IPR036236 -
Mtr1g4403 205 Pfam C2H2-type zinc finger 44 70 - -
Mtr1g4403 205 Pfam C2H2-type zinc finger 96 120 - -
Mtr1g4403 205 PANTHER ZINC FINGER PROTEIN ZAT5 15 187 - -
Mtr1g4403 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Mtr1g4403 205 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Mtr1g4403 205 PANTHER ZINC FINGER PROTEIN ZAT12 15 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4403 Mtr-Chr1 55759088 55760092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4403 1 188 C2H2 Transcription Factor Family AT2G37430 40.306 1.83e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g4403 zf-C2H2_6 6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4403 - - gmx:100500371 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4403 1 55759088 55760092 Mtr1g2276 1 33151029 33151715 ECH
Mtr1g4403 1 55759088 55760092 Mtr1g4403 1 55759088 55760092 ECH