Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4400 ATGGTGAACATGATGGAATGGCAGAAACAACAAGTACAGAATGGGAATGTCGAAGCGATGTATGTTAAGGTGATGACTGATGAACAATTGGAAACTTTGAGGAAACAAATTGCTGTTTATGCTACCATTTGTGAACAACTTGTTGAGATGCATAAAACACTCTCTGCTCAACAAGATCTTGCTGGGGTTAGGTTGGGGAATTTATACTGCGACTCATTGATGACAGCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCGGTTCAGCTCCAGATTCTTGAGCGTATATTCGATCAGGGAAATGGAACTCCAAGCAAAGAAAAAATCAAGGAGATTGCTACTGAACTCAGCCAGCATGGCCAAATTTCTGAAACGAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCGAAAAGAAAAATGCAAAATGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAGGTTGATTCCAAGGATAAGAAGACAAAACCAGAGGAATTTCATTCTCAACAAAGTGCTGCTCTAGGGGATGAAAATTTGTGCTTCCAGAACCAAGAAAAATGCTCTGAATTGCAGTACTTGAATCATGGTTCTAACAAAACATATTCTGTGTTTCCATCGGATGGCGGTATAAGATCCACAAGAAATTTGAGTGGCGTATCTCTTTATGATGAAGTGCTATCAAACTCAAGGAATGACTATCTAGGTGGAAAAATGGAAGTATCTGGGAGTTACAATATATACCAGCAAGCAGAGGACTTCAATTTGGCAGGTTGA 795 0.4025 MVNMMEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNLYCDSLMTAGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFHSQQSAALGDENLCFQNQEKCSELQYLNHGSNKTYSVFPSDGGIRSTRNLSGVSLYDEVLSNSRNDYLGGKMEVSGSYNIYQQAEDFNLAG* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4400 264 PANTHER - 3 263 - -
Mtr1g4400 264 SUPERFAMILY Homeodomain-like 82 146 IPR009057 -
Mtr1g4400 264 Pfam Homeodomain 83 143 IPR001356 GO:0003677
Mtr1g4400 264 SMART HOX_1 81 148 IPR001356 GO:0003677
Mtr1g4400 264 Gene3D - 85 149 - -
Mtr1g4400 264 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 263 IPR044559 GO:0003700
Mtr1g4400 264 CDD homeodomain 83 145 IPR001356 GO:0003677
Mtr1g4400 264 MobiDBLite consensus disorder prediction 157 172 - -
Mtr1g4400 264 MobiDBLite consensus disorder prediction 141 172 - -
Mtr1g4400 264 ProSiteProfiles 'Homeobox' domain profile. 79 144 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4400 Mtr-Chr1 55732547 55735903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4400 4 264 Wox Gene Family AT4G35550 49.329 5.70e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mtr1g4400 Homeodomain 3.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4400 - - pvu:PHAVU_007G011600g 377.096