Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4387 ATGGCAACGAAAGGTACGAAAAGGGTTGATGCCGTCGATTCTCGTTCCGCTTCCGTTCTCGTTCGTGCCAAAGATGGCAGTGCTTTTGCTAAATGTGATGAGTGTAAGAAAGATGTTCCTGTTGCACTCATTGACATGCACAATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTCGAATCTCATGCTGTTGAGCAAGCTGCTGAAGTGAAGAAACCTGAGAGGAAGAAGCCAAATTCAAAAGAACCAAATGCGAAAAGGGCTAAAGTTGGGAAAGGGAAAAAGGTTAAGGATCCTAATGCTCCTAAGCGTCCGCCAACTGCTTTCTTTGTTTTCATGGATGAGTTTAGAAAGATTTTTAAGGAAGCTAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAGGAAGCTGGTGAGAAGTGGAGGTCTTTGACTGAGGAAGAGAAGAAGCCTTATTTGGATAAGGTTGTTGAACTCAAGGCAGAATATGATAAGGCCATGGAATTGTATAATGCTGCTACTGCTGAAAGTGAAGATCAAGAGGGTTCAGATAAGGAAGATAAGGAAGGCCAGTCTGATGACAAGGAAACTGCTGCTGCAGGAGAGGTGGAGGAGTTAACTGATGAAGAGTAG 633 0.4313 MATKGTKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALIDMHNCSLEAKIKMNLESHAVEQAAEVKKPERKKPNSKEPNAKRAKVGKGKKVKDPNAPKRPPTAFFVFMDEFRKIFKEANPDSKDVKRVGKEAGEKWRSLTEEEKKPYLDKVVELKAEYDKAMELYNAATAESEDQEGSDKEDKEGQSDDKETAAAGEVEELTDEE* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4387 210 MobiDBLite consensus disorder prediction 123 148 - -
Mtr1g4387 210 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Mtr1g4387 210 Gene3D High mobility group box domain 85 187 IPR036910 -
Mtr1g4387 210 SUPERFAMILY HMG-box 89 171 IPR036910 -
Mtr1g4387 210 MobiDBLite consensus disorder prediction 170 210 - -
Mtr1g4387 210 MobiDBLite consensus disorder prediction 66 101 - -
Mtr1g4387 210 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 196 - -
Mtr1g4387 210 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 196 - -
Mtr1g4387 210 CDD HMGB-UBF_HMG-box 102 168 - -
Mtr1g4387 210 Coils Coil 156 176 - -
Mtr1g4387 210 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Mtr1g4387 210 SMART hmgende2 101 172 IPR009071 -
Mtr1g4387 210 MobiDBLite consensus disorder prediction 178 202 - -
Mtr1g4387 210 MobiDBLite consensus disorder prediction 66 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4387 Mtr-Chr1 55614025 55615755 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr1g4387 HMG_box 1.9e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4387 K25507 - gmx:100306558 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4387 1 55614025 55615755 Mtr1g4387 1 55614025 55615755 ECH