Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4386 ATGCTTGATAATGTGGACAACATTATCGACTCAACTTGGAGACTATGTGCTCTTGTAGGTGGTTGGGTTTCTGGTTTAATTTCAAAACCTTACACAAAAGTGGTTGGCTCTGCATTTGATGGTTCTATTTCTAGGTTGGCCAACGAAAGGGAAAATCGTTATTTAGATTACATGGATCAGTGTATATATATTAGTTCGTCGGATGATGAGTTGGAGGAAATTGTAGATCCTAGGAGGATTCCCCCAATATGGGCATCTGAAAGGAATTCAGATTCAAGAAGGGCAAAAAGTTCAAACGCGAGCTCGTCTAACGTTTTTAATCATTCACAAGTTAAGCCCAATAATCAACCTGGTCCGAGCAATGGAAGCACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATTCCAATGGTGCCGGTTATGAGAAAATGTCATCTCAACAAGCTTTCAACAGGACCCTTCCACCATCTTTTCAATCATCTGCCTCAAGGGCTCTTCCACCTTCGTCATTTGCACCCAATAACAGATTAAGTAACTCAAGCAGCAGTCAGCTGCATGATGCATACAAGAGTCGTCACCATGGAGTAGGACCTAGCTCATCCGGTGAGAAGGGCTTTTTTCGAGGCAATGATGGAGATCGTTTCATGAATCAGAATGGTGGGACCAGGGCTCTTCCTCCATCTTTGATGCTTGGAAAGGCTATAACTCCACCATTTGCTAGTTCTAGTGAGATGTACCGCTCTGGAGCAGGTGATGAAAGGGCTCCTGAAACTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATATCAGTCAACCATTAAAAGAAGCTGATTTACCTGCTGGTATAATGTCTGTACCTCTAATGAGACATCAGAAAATTGCACTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATCCACGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAGAATGGTAGTATTGATGTGGAAAAGGAAAAGCTTAAAAATGATGAAGAATCCAATGATGCAAAACCTATTACTGAACCGAGTAGTTCAACACAGGCCCCAGGTAGGAAAAGGCCAGCTGCCGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGACGTGGTTCTCACAACATACTCTCTTGTGACTAACGAAGTTCCCAAACAACCTTTAGTCGAGGAGGATGATATTGATGAAAAAGACGGGGAAAAGTTTGGCTTATCCTCCGATTTTTCTGTCAATAAAAAGAGGAAAAAGCTATATAATGGAAGTAAGAAGGGTAAAAAAGGTAGGAAGGGATTAGACGGCTCTTCTTTCGATTGCGGTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCTAGAGCTTGCTCCAGCCTTAGGGCAAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACCATTGATGATTTATATAGTTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCTATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCTATAATCACTTTACCTCCTAAAACAATTAATCTGGAGAAGGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCAGCTGCTGGCACAGTAAATCAAAACTACGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCGCTTCTTGTTAAAGAATATAATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAAGGAGATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCCGCTATATGCTGTGTCTGCAATGATCCACCTGATGACTCTGTTATTTCGATGTGTGGCCATGTTTTCTGTTATCAATGCGTGTCAGAACATTTGACAAGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGGGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCCTCTGTGACGATCTTGGTGGTAGTAGTTCTAGCAACTCGAGTCTTGTTGATTATTCCCTAGTACAGAACAGTGAGTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAGTTGTAAATTGAAGACTCCTGGCTTACTGAATACCCCCGAAGGCAATAGAGATTCACTGCCTTCTGATGATTCCGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAAACACACAAGTAAATATTCAGAGTGCACATCTGGAGGACCACTAAAGGCTATAATTTTTTCTCAGTGGACTAGCATGTTGGACTTGGTCGAGACATCAATGGAGCAATCTGGCGTCAAATACAGGAGACTTGATGGTAGGATGACTCTTACTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCCGCATGTCATGTTATTCTTTTGGACCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATCGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATATTGGCTCTACAGGAAGAAAAGAGAAAAATGGTGGCATCTGCATTTGGCGAAGACCATGCTGGCGGTTCTGGAACTCGGCTTACTGTTGATGATCTGAAATATCTTTTCATGGTTTAG 3123 0.415 MLDNVDNIIDSTWRLCALVGGWVSGLISKPYTKVVGSAFDGSISRLANERENRYLDYMDQCIYISSSDDELEEIVDPRRIPPIWASERNSDSRRAKSSNASSSNVFNHSQVKPNNQPGPSNGSTSQHQTVNSRISNSNGAGYEKMSSQQAFNRTLPPSFQSSASRALPPSSFAPNNRLSNSSSSQLHDAYKSRHHGVGPSSSGEKGFFRGNDGDRFMNQNGGTRALPPSLMLGKAITPPFASSSEMYRSGAGDERAPETDERLIYEAALQDISQPLKEADLPAGIMSVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQIKWKTDDPRNHKAEALNLDDDDENGSIDVEKEKLKNDEESNDAKPITEPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEEDDIDEKDGEKFGLSSDFSVNKKRKKLYNGSKKGKKGRKGLDGSSFDCGGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLEKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKKLPKEMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTSDDNMCPAVHCKEQLGEDLVFSKATLRSCLCDDLGGSSSSNSSLVDYSLVQNSEYSSSKIKAVLEVLQSSCKLKTPGLLNTPEGNRDSLPSDDSDIEDFDSDVKVTKHTSKYSECTSGGPLKAIIFSQWTSMLDLVETSMEQSGVKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4386 1040 SMART ring_2 736 774 IPR001841 -
Mtr1g4386 1040 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 872 1035 IPR001650 -
Mtr1g4386 1040 Gene3D - 266 348 IPR038718 -
Mtr1g4386 1040 Gene3D - 513 633 IPR038718 -
Mtr1g4386 1040 SMART ultradead3 286 599 IPR014001 -
Mtr1g4386 1040 CDD DEXDc_SHPRH-like 290 620 - -
Mtr1g4386 1040 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 86 1039 - -
Mtr1g4386 1040 MobiDBLite consensus disorder prediction 95 187 - -
Mtr1g4386 1040 Gene3D - 795 1039 IPR027417 -
Mtr1g4386 1040 Pfam Helicase conserved C-terminal domain 887 982 IPR001650 -
Mtr1g4386 1040 MobiDBLite consensus disorder prediction 85 231 - -
Mtr1g4386 1040 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 582 IPR014001 -
Mtr1g4386 1040 MobiDBLite consensus disorder prediction 370 402 - -
Mtr1g4386 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 786 IPR013083 -
Mtr1g4386 1040 ProSitePatterns Zinc finger RING-type signature. 751 760 IPR017907 -
Mtr1g4386 1040 SUPERFAMILY RING/U-box 731 773 - -
Mtr1g4386 1040 Pfam Zinc finger, C3HC4 type (RING finger) 736 772 IPR018957 GO:0046872
Mtr1g4386 1040 CDD SF2_C_SNF 887 991 - -
Mtr1g4386 1040 ProSiteProfiles Zinc finger RING-type profile. 736 772 IPR001841 -
Mtr1g4386 1040 SMART helicmild6 899 982 IPR001650 -
Mtr1g4386 1040 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 86 1039 - -
Mtr1g4386 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 620 IPR027417 -
Mtr1g4386 1040 Gene3D - 387 474 IPR038718 -
Mtr1g4386 1040 Pfam SNF2-related domain 293 697 IPR000330 GO:0005524|GO:0140658
Mtr1g4386 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 1039 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4386 Mtr-Chr1 55589544 55599762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4386 58 940 RAD5 or RAD16-like Gene Family AT1G50410 57.050 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g4386 SNF2_N 1.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4386 - - gmx:100795142 1474.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4386 1 55589544 55599762 Mtr1g4386 1 55589544 55599762 ECH