Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4372 ATGTCGGAAACACCGTCGCAGCCACCACTCACCACCACCACCGAAACCCTACCTCCATACTGGTGCTACCACTGCGACAAACGCGTCTCCGTTGAAACCGTCGCGAATCTCCCCGACCTCATCTGCGGCGATTGCAAAAACGGCTTCGTTGAATCAATCCCCACACCTTCTCGCTCTCGTTCACCTTCTTCCTCCTCCGATGATCCCAATTTCGGTTCACAGTTTCTTCAGGTTCTTCGCCTAATCGCTCAATCGTCGCGTGACGACGACGCGTCTCCACCACCTCCACCTAGTCGTTCACCGGAGAATGATTTTCTCAGAATTGAACTCGGTGGTTGGGACCATGACGATGAAGACAACGAAGACGATGAGTTTCATAACGACGGTGGAGATCACGAAGGTGTCGCCGAGGAGCTTGAGGATCGATTGGGAATTGAGGATCCACACGGAGAGGATGAAGATATGAGACGAAGGAGACGCGATCTGTTACGTCATCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCAGAATCGGATCTTGGATTGGGCTGAAATTTTGATGGGACTTGAAGATAATTCGATTGAGTTTCGTCTTCAGGCACCAGAATTGGACCGGTACGTTGGTAATCCGGAGGATTATGTTGATGCGGCGGAGTATGAGGCGTTGCTGCAGACGTTGGCGGAGAATGATGGAAATGGGAGGAGAGGAGCTCCACCGGCGTCGAAGTCGGCGGTGGAAGCATTGCCGACAGTGAAGATTGCGGTGGGGAGTGAGGTGGTTGCTTGTGCTGTATGTAAGGAAATGCTTGGTGTTGGAGAAATGGCAAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCATGGTTGAGTACTAGAAATTCTTGTCCTATTTGCAGGTTTGAGCTTCCAACTGATGATAAGGAATATGAAGATGAGAGAGCTTCCGGTTCGGGTCGTGGCGGTGGTGGTGGAGCTTCCACCGTTTGA 1005 0.5154 MSETPSQPPLTTTTETLPPYWCYHCDKRVSVETVANLPDLICGDCKNGFVESIPTPSRSRSPSSSSDDPNFGSQFLQVLRLIAQSSRDDDASPPPPPSRSPENDFLRIELGGWDHDDEDNEDDEFHNDGGDHEGVAEELEDRLGIEDPHGEDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQAPELDRYVGNPEDYVDAAEYEALLQTLAENDGNGRRGAPPASKSAVEALPTVKIAVGSEVVACAVCKEMLGVGEMAKRLPCGHEYHGDCIVPWLSTRNSCPICRFELPTDDKEYEDERASGSGRGGGGGASTV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4372 334 MobiDBLite consensus disorder prediction 53 72 - -
Mtr1g4372 334 SMART ring_2 264 304 IPR001841 -
Mtr1g4372 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 311 IPR013083 -
Mtr1g4372 334 Pfam Ring finger domain 264 305 IPR001841 -
Mtr1g4372 334 Pfam zinc-ribbon 20 53 IPR039525 GO:0061630
Mtr1g4372 334 MobiDBLite consensus disorder prediction 314 334 - -
Mtr1g4372 334 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Mtr1g4372 334 MobiDBLite consensus disorder prediction 112 154 - -
Mtr1g4372 334 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 321 - -
Mtr1g4372 334 MobiDBLite consensus disorder prediction 127 154 - -
Mtr1g4372 334 SUPERFAMILY RING/U-box 263 311 - -
Mtr1g4372 334 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 321 - -
Mtr1g4372 334 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4372 Mtr-Chr1 55449934 55451327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4372 104 317 C3H Transcription Factor Family AT5G01980 40.278 2.07e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4372 - - gmx:100780991 461.07