Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4360 ATGTCTTCTGGCGGCGACGGCGGTGGAGGTAAGTTTTTTTTCTGCCACGTATGCAGTCGGAGAGTTACCTGCACCGACGATGATTCCGAACCTTTCTGCCCAATTTGCTTCCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCAAGATCATTCCTCCGATTCAGATTCCGAATTCCCATTCCATCCCTTCGCTCTTCTCCCATTACTCCTTAATTCTGCTTCCGTTTCCCGGACCCGACCCGATTCCGACAGTTTCGACCCATTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATAATCCTTCTGAATCCGAACCTGGGTTTCGTGTTCCCTCTAACCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTCGCAGAGAATGATCCTAACCGTTACGGAACACCGCCGGCATCGAAAGAGGCTGTTAAGAATCTTCCAACGGTAACTGTTGATGATGCGTTGTTGAGCTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTATGCAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGATAACAGTGGTGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACTGGTGGTGGTGGTAGTGGTGGTGGAGGAGGAAATAGGCCTGTCCACAGGACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGGCGACTCTGCTCAAGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA 948 0.4778 MSSGGDGGGGKFFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHQDHSSDSDSEFPFHPFALLPLLLNSASVSRTRPDSDSFDPFAFLQNHLNGLHADGANIQFEINNPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDALLSSELNQCAVCQDEFEKGMQVKQMPCKHVYHDDCLLPWLELHNSCPVCRHELPTDDADYENRGRDDNSGDGLRSVVGGNSTGGGGSGGGGGNRPVHRTFRISLRYPFGSGDSAQDSGERGFGNRQEDLD* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4360 315 MobiDBLite consensus disorder prediction 238 315 - -
Mtr1g4360 315 CDD RING-H2_RNF126_like 193 235 - -
Mtr1g4360 315 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Mtr1g4360 315 SUPERFAMILY RING/U-box 173 241 - -
Mtr1g4360 315 SMART ring_2 194 234 IPR001841 -
Mtr1g4360 315 PANTHER OS06G0101300 PROTEIN 10 298 - -
Mtr1g4360 315 MobiDBLite consensus disorder prediction 238 255 - -
Mtr1g4360 315 Pfam Ring finger domain 192 235 IPR001841 -
Mtr1g4360 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 241 IPR013083 -
Mtr1g4360 315 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Mtr1g4360 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4360 Mtr-Chr1 55299675 55301917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4360 138 251 C3H Transcription Factor Family AT5G01980 47.368 7.43e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4360 K11982 - lja:Lj5g3v2258550.1 371.318