Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4355 ATGGAGAACGACACCACCGCCACCAACAACGGCACGGCCAAAGTAGGTTCAGGCGGAGGAGGAGTCAAATCCAACAATCACATCCGTGAAGAAGAAGAAGAACATTCCAATTTGAATAGCGTAGAAAACCTACCAGAAAAAATAGAAGAAAACGATGAACACGAAGCGGAACAACAACAAACTGGATCTGAAACCAATACTCAACAACCTTCCAGAACTCCTTTCACTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCTCGAACCCTTCAAGAGCAGGAAAGGGCGTACATGATGCTGAGAATGAATAATGATGGAAGCGATTATGGAAGTTGGGAGGGTGGGAGCTATTTGCATGATGATGGAGATGATTTTGATGATCTACATGACGGCACTGATGTGGATGATGAGGATGATGATGAAGACGATGACAACGAGGAGGATTATGAAGATGAAGACGAAGATGCATTTGACGTCCATGATCATGCTAGTGTTGGAGACCGTGAGAATAATCCCGTCATTGAATTTGACCCGGAGTTGTTTTCAAGTGATGAAGCTTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTTGCTCTTGCTGGGATACATGATCTTTCGTTTTCAATTACAGAGGACGCTGAGGACATGGAGGAACATGCTGCTAACTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCACTGGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCTGTTTACCTTCAGTCAACTATAAGGCGGGGAGCGATCAACTTGGGAGCAATGATTCGTGTGTCATTTGCCGGGTAGACTATGAGGATGACGAGTCCTTGACAGTTCTTTCATGCAAGCATCTGTACCATCCCGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGCACAGAGGTATCTGCTTCTGGGAGCAATTTGTAG 1020 0.4578 MENDTTATNNGTAKVGSGGGGVKSNNHIREEEEEHSNLNSVENLPEKIEENDEHEAEQQQTGSETNTQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDDEDDDEDDDNEEDYEDEDEDAFDVHDHASVGDRENNPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSITEDAEDMEEHAANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKAGSDQLGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4355 339 MobiDBLite consensus disorder prediction 25 59 - -
Mtr1g4355 339 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Mtr1g4355 339 MobiDBLite consensus disorder prediction 1 15 - -
Mtr1g4355 339 Pfam Ring finger domain 286 328 IPR001841 -
Mtr1g4355 339 CDD RING-H2_PA-TM-RING 288 328 - -
Mtr1g4355 339 MobiDBLite consensus disorder prediction 1 80 - -
Mtr1g4355 339 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 24 337 IPR043312 -
Mtr1g4355 339 MobiDBLite consensus disorder prediction 108 174 - -
Mtr1g4355 339 MobiDBLite consensus disorder prediction 127 158 - -
Mtr1g4355 339 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 24 337 - -
Mtr1g4355 339 SUPERFAMILY RING/U-box 281 333 - -
Mtr1g4355 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 335 IPR013083 -
Mtr1g4355 339 SMART ring_2 288 328 IPR001841 -
Mtr1g4355 339 MobiDBLite consensus disorder prediction 60 80 - -
Mtr1g4355 339 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4355 Mtr-Chr1 55261885 55268286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4355 71 223 C3H Transcription Factor Family AT3G19910 54.902 1.14e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4355 K19045 - gmx:100787418 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4355 1 55261885 55268286 Mtr1g2050 1 30294170 30297086 ECH
Mtr1g4355 1 55261885 55268286 Mtr1g4355 1 55261885 55268286 ECH