Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4348 ATGGCGGGTGAAGAAAACAACACTGGTGCCGAAACGGTGCCGTTAAAGGTTGATGACGTGACACAAATCGTCAATATTGTCGCCGATACGGCGTCGTTGAAGGACGGTGAAATAGGCGATGACGTGGCAGTAGAAGAAGAATCTGTTCCTGATCGTGAAAAACAAGCTATTGTATCCGAAACGGCGTTGTTGAAGAACGATTTAGCTTCTGTTGAAGGTGATGACGTGGCAGCCGGAGATTCTTCTTCCATTCAAGTGATAAGAAAGTACGGTAGAAGGAAAAAGAAACCGGGAAGAAAGAGTAATGCTGAAATCGAGAAGGAGAAAATTGGGAACGGAACAAAAGAAGAAACAAGTAAAGGTGATGATGACGTGGCAGACGGAGACTCTATTTCCGTTCATGCTTCCACCGATGCTACCACTCCGGCAAAGAAACGCGGTAGAAAGAGAAATACGGAGAAGGAAAATGAAACAGGGAAAGATGCTGAGGTGGAAGGAGGGTTTTCTTCTGTTGGTGTGAGAAAGAGTGAAAGGCCTAGGAAGATTAAATCGTTGAAGGAAGATTACGTGTCGGATTTGGAGGAGGATGTGAGGAAAAAGGGGAAACGTGGTAGGAAGAAGGTCATAATTGGTGTTTCTGATGAAAATGTGAAAACAGAGAAGAAGAAACCTGGTAGGAAAAGGAAGGAACTTTTTAGTTCTGGAGATGAAAATGAAGCTGAAAATGAGGGAGGAACTGTAAAAAAAGAGGAAAAGAAGAAACCTGGTAGAAAAAAGAAGGTAAGTTATAGTTCTGAAGAAAATGACGAAGATGAACAAGATGGGGAAAATGGTAGAAATGTTAAGATTGAGGAGAATGAACTGATCAGTGAAAAGAATTCAGAGAGTGGTGTTTTATCTGATGATAATAAAGGCTATTCTTTAAGAAAGGCTAAAAAAACCAAGCCTGACTGCAGTGAACAGGAACAGACAGTCCCAAAGTTCAACAAGAGAAATCCTAAGTGGATCGAAGAGGAATCCTTGATGTGCCATCAATGTCAGAGAAATGACAAGGGCAGGGTTGTTAGATGCACAAAATGCAAACGGAAAAGATATTGCATACCATGTTTAAACAACTGGTATCCTCACTTGAAAGAGGAGAAAATTGCTGAGGCATGTCCAGTGTGCTGTGGTAATTGCAATTGCAAAGCTTGCTTGCGATCATCTGTACTTATCAATGAAATTAAAAAGAAGACGAAAACCAACAACAGCCATGAGGTTGAGCCCTCCAAATATATGCTGAAAGTACTTCTTCCATATTTAAGTCGTTTGGATGAAGAGCAAATGGCTGAGAAGGAGATAGAAGCAAAGATACAAGGGCTTTCACTTTCTGAGCTAAATATAAAAGTTGCAGACATCCCTAAAAAGGAGCGTGTGTACTGTGACATCTGCAAAACCTCAATATTCGACTACCACAGAAGCTGTACAAAATGTTCTTTTGACATTTGTCTCCTTTGTTGCTGTGAGCTTCGTGGTGGGAAGCTTCTAGGTGGTGCAGATCCAATTGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATCTTCATGGTGGAGAAGAAGAGAGGGTAAGAAAAAAAGAACCTCGTGCTGCTGCCCTGCCTGAGATTCCTGAATGGTCAAGATCTGGGTGGCATGCAAATGATGATGGTAGCATTCCCTGTCCAAAAGCCGATGGTGATCATGGTTTCCTTGAACTGAGAAGTACACTTCCACCAAATTGCATCTCCGAGTTAGTATGTAAAGCAAAAGAACTTGAAGCAACAATTACGCTTCAAGATGTAAAGGAGACTTTTGATAGTAGGTGTTCTTGTTTGAAGCCTGTCAGGAATGAAGAAGATATACACAACAACACAAGGAAGGCAGCTTCCCGTGAAGATTCAAGTGATAACCTTTTATACTGTCCCAGGGCTGTAAATCTACACAATGAGGATTTACAACATTTTCAACAGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTCCGACAGATAAGCAATACCAAGCACAAAACACTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGGAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAAAGGTCGCCCTGATTGGCTTAATTGGCCTCAGGTTTTGAAATTGAAAGATTGGCCTCCTTCTAACTTATTTGAAGAAAGTTTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAAAGGTGTTCTTAACCTTGCTGTAAAGTTGCCTGAAAATGTTCTAAAGCCAGATATGGGACCAAAAACATATATTGCTTATGGATTTGATCAGGAACTTGGGCGGGGTGATTCTGTGACTAAGCTTCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGAACTCTGTTGGTCTTGCTGCCATTAAGAAATTGACAGAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCAGGATGGAGAGACCACTGTTAACAAGCTTGATAATTCATCTTCCATAAATGCTTCAGACGAGAAAAATTGCGTTCCAGTCATGGAAAATAGGGGCGATTCTTTAGACGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGTTCCTAAGTTGGAGGAATATTTAAAGAAGCATTTCAGAGAGTTCAGGCATGTCCACTCCTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGATCAGCACTTTTATTTGACTATCGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAACCTTGGACTTTTTTCCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCGCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTTCGTTTGACAGAGGAATTCCGTAAACTTCCGGTAAATCACAGGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGATTATATATGCTATGCTTGAACTGGTGGAGAAGTTGGAGAAAGCAAGGTCTGGAAAAACCAAGGTTCCAATGTAA 3180 0.4154 MAGEENNTGAETVPLKVDDVTQIVNIVADTASLKDGEIGDDVAVEEESVPDREKQAIVSETALLKNDLASVEGDDVAAGDSSSIQVIRKYGRRKKKPGRKSNAEIEKEKIGNGTKEETSKGDDDVADGDSISVHASTDATTPAKKRGRKRNTEKENETGKDAEVEGGFSSVGVRKSERPRKIKSLKEDYVSDLEEDVRKKGKRGRKKVIIGVSDENVKTEKKKPGRKRKELFSSGDENEAENEGGTVKKEEKKKPGRKKKVSYSSEENDEDEQDGENGRNVKIEENELISEKNSESGVLSDDNKGYSLRKAKKTKPDCSEQEQTVPKFNKRNPKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRYCIPCLNNWYPHLKEEKIAEACPVCCGNCNCKACLRSSVLINEIKKKTKTNNSHEVEPSKYMLKVLLPYLSRLDEEQMAEKEIEAKIQGLSLSELNIKVADIPKKERVYCDICKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGADPIEFEFIFRGRDYLHGGEEERVRKKEPRAAALPEIPEWSRSGWHANDDGSIPCPKADGDHGFLELRSTLPPNCISELVCKAKELEATITLQDVKETFDSRCSCLKPVRNEEDIHNNTRKAASREDSSDNLLYCPRAVNLHNEDLQHFQQHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKTLLDVKAIDCLDWCEGDINVHQFFTGYTKGRPDWLNWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTDPFKGVLNLAVKLPENVLKPDMGPKTYIAYGFDQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLNSVGLAAIKKLTEKHLEQDKRELHGDNQDGETTVNKLDNSSSINASDEKNCVPVMENRGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHSSPLKQVIHPIHDQHFYLTIEHKKRLKEEYGIEPWTFFQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSTEDKLEVKKMIIYAMLELVEKLEKARSGKTKVPM* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 99 129 - -
Mtr1g4348 1059 ProSiteProfiles JmjC domain profile. 777 1017 IPR003347 -
Mtr1g4348 1059 SUPERFAMILY Clavaminate synthase-like 651 1038 - -
Mtr1g4348 1059 SMART cupin_9 758 1017 IPR003347 -
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 174 251 - -
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 858 886 - -
Mtr1g4348 1059 ProSiteProfiles Zinc finger RING-type profile. 343 389 IPR001841 -
Mtr1g4348 1059 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 106 1049 IPR045109 GO:0032454|GO:0033169
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 305 320 - -
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 275 291 - -
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 66 324 - -
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 141 162 - -
Mtr1g4348 1059 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 106 1049 - -
Mtr1g4348 1059 MobiDBLite consensus disorder prediction 871 886 - -
Mtr1g4348 1059 Gene3D Cupin 641 1026 - -
Mtr1g4348 1059 Pfam JmjC domain, hydroxylase 904 1000 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4348 Mtr-Chr1 55203951 55212703 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g4348 JmjC 1.2e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4348 K15601 - gmx:100780803 1130.93