Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4346 ATGGCTGAGGAAGAGAACAATGACATAGTCACGTATATAGTGAAAATCAAAGTCATACTCACCGTCCCGGACCCAGATGAACCCATTCCTGATCATGATCATCGAGAAACACAACCCACTGCCAATGTTGGCGCGGAAATGGTACCGTTGGAGGATGGTGATGTGGCACAAGCTATCGGTGTTGGAGCTGAAACGGCGTCGTTGAAGGACGATGAACGTGATGACGTGGTGGAAGTAGCTGAAGAATCTGTTCCTGATCGAGGAAAACAAGACATGGATGTTGGACCCAAAACGGTGGTGTTGTTGTCGACGGACGATGATGGTTCTGTTGAAGCTGATAGCATGGCAGCTAAGGATTCTGATGAAAACAATGCTGCACAAGAGGGTGAAGAAAATGTCATGAAAGAGAAGAAGAGAGCTGGTAGAAAAAGAAGAAAGACAGTTTATAGTTTGGAAGAGGGTGAGGAAAATGAACTTGTCAGCGAAAACAATTGGGAAGGTGCTGACGTGGAAGAAGGAGGTTTTTCTTCTGGTTGTGTGAGAAAGAGGGAAAGGCCTAGGAAGATTAAATCGTTGAAGGAAGATTACATTTCAGATTTGGAGGAGGATGTGAAGAAGAGGTGGAAACGTGGTAGGAAGAAGAAGGTCATAATCGAGGTTTCTGATGAGAATGATGAAGCTGAACGAGAGGAGGAGAATGCAAAGACAGAGAAGAAGAAACCTGGTAGAAAAAGTAAGGTAAGTTATAGTTCTGAAGAAAATGACGAAGATGAACAAGAGGGAGATAATGGTAAAAAAGTTAAGATTGATGAGAATGAACTGATCAGTGAAAAGAATTTGGAAAGTAATGTTTTATCTGATGATAATAAAGGTTATTCTTTAAGGACCTTTAAAAAAGTGAAAGCTAAAAGCATTGAACAGCTGAAGCAAAAAATTAACAAACGGAATCCTAAGTGGATTGCAGAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGACAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATTTTGCATACCTTGTTTAAACAATTGGTATCCTCACTTGAAAGAGGAGGAAGTTGCCGAGGCATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCATGTGCACTTATCAAAGAAATTAAAACGAAGACAGAAACCAACAACAACCATGAGTTCGAGCTCTCCAAGTATATGGTGAAAGAACTTCTTCCATATTTAAGACGATTGGATGAAGAACAAATGGTCGAGAAGGAGATAGAAGCAAAGAGACAAGGGCTCTCACATTCTAAGCTAAAAGTAAAAGTCGCAGATTACCCTAAAAATAAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCTTTTAACATTTGTCTTCTTTGTTGTTGTGAGCTTCGTTGTGGGAAGCTTCTAGGTGGTACAGATCCAATTGAGTTTGAGTTTATCTTCCGAGGCCGTGATTATCTTCATGGTGGAAAAGAAGAGAGGGTAAAAAAAAATAAACCTCATTCTGCTGCCCAGCCTGAGATTTGTGAGTGGTCAAGATTCGGGTGGCATGCAGATAGTGATGGTAGCATTCCCTGTCCAAAAGCCGATGATGATTGTGGTCATGGTTTCCTCGAACTGAGAAGCATACTTCCACCAAATTGCATCTCTGAGTTAGTATGTAAAGCGAAAGAACTCGAAGAAACAGTTAGGCTTCAAGATGCAGAGGAGACATTTGATAGTACGTGTTCTTGTTTGAAGCCTGTTAGGAATGCAACTGATATACACAATAACACAAGGAAGGCAGCTTCCCGTGAAGATTCCAGTGACAACTTCTTGTATTCCCCCAGAGCTTTAAATCTACTACGTCATGAGGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTATCAGCAATGTACTTGAATGTACAACTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTCCGTCAGATAAGAAATACCCAGCACAAAACACTTTTGGATGTGGAGGCAATTGATTGCTTAGATTGGTGTGAGGGAAATATTAATGTGCACCAATTCTTTACTGGGTACACAAATGGTCGCCCAGATTGGCTTAATTGGCCTCAGGTTTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTAGGGAAAGTTTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAAAGGCATTCTTAACCTTGCTGTGAAGTTGCCTGAAAATGTTCTAAAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTCCACTGTAATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGAAATCTGAGGGCATTGCTGCCATTGAGAAACTGACACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCAAGATGGAGAGACCAACGTTGACATGTTTGATAATTCATCTTCTTCCATAAATGTTTCAGACGAGCAAAATAGTGTTCGAGTTATGGAAAATGGGGGTGATTCTTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGATGTACCTGAATTGGAGGAATATTTAAAGAAGCATTTCAAAGAGTTCAGGCATGTCCATTGCTCTCCTTTAAAGCAGGTTATTCATCCCATCCATGACCAGACCTTTTATCTGACTCGAGAGCATAAGAGGAAACTTAAGGAGGAGTATGGAATCGAGCCTTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTAAAGTCATGCATCAAGGTCGGACTTGATTTTGTCTCACCTGAAAATGTTGGCGAGTGCTTCCGTTTGACTGAGGAATTCCGTAAGCTTCCGATAAACCACAGATCCACCAAGGACAGCTTGGAGGTGAAGAAAATGACTATATATGCTATGCTTGATGTGGTTAACAAATTGGAGAAAACAAAGGTTTGGAGAAACCAATGA 3135 0.4137 MAEEENNDIVTYIVKIKVILTVPDPDEPIPDHDHRETQPTANVGAEMVPLEDGDVAQAIGVGAETASLKDDERDDVVEVAEESVPDRGKQDMDVGPKTVVLLSTDDDGSVEADSMAAKDSDENNAAQEGEENVMKEKKRAGRKRRKTVYSLEEGEENELVSENNWEGADVEEGGFSSGCVRKRERPRKIKSLKEDYISDLEEDVKKRWKRGRKKKVIIEVSDENDEAEREEENAKTEKKKPGRKSKVSYSSEENDEDEQEGDNGKKVKIDENELISEKNLESNVLSDDNKGYSLRTFKKVKAKSIEQLKQKINKRNPKWIAEESLMCHQCQRNDKGRVVRCTKCKRKRFCIPCLNNWYPHLKEEEVAEACPVCCGNCNCKACLRSCALIKEIKTKTETNNNHEFELSKYMVKELLPYLRRLDEEQMVEKEIEAKRQGLSHSKLKVKVADYPKNKRVYCDNCKTSIFDYHRSCTECSFNICLLCCCELRCGKLLGGTDPIEFEFIFRGRDYLHGGKEERVKKNKPHSAAQPEICEWSRFGWHADSDGSIPCPKADDDCGHGFLELRSILPPNCISELVCKAKELEETVRLQDAEETFDSTCSCLKPVRNATDIHNNTRKAASREDSSDNFLYSPRALNLLRHEDLRHFQWHWSKGEPVIISNVLECTTGLSWEPLVMWRAFRQIRNTQHKTLLDVEAIDCLDWCEGNINVHQFFTGYTNGRPDWLNWPQVLKLKDWPPSNLFRESLPRHCAEFISSLPYKEYTDPFKGILNLAVKLPENVLKPDMGPKTYIAYGFAQELGRGDSVTKLHCNMSDAVNVLTHIAEVKLKSEGIAAIEKLTQKHLEQDKRELHGDNQDGETNVDMFDNSSSSINVSDEQNSVRVMENGGDSLDGALWDIFRREDVPELEEYLKKHFKEFRHVHCSPLKQVIHPIHDQTFYLTREHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTEEFRKLPINHRSTKDSLEVKKMTIYAMLDVVNKLEKTKVWRNQ* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4346 1044 MobiDBLite consensus disorder prediction 63 184 - -
Mtr1g4346 1044 Coils Coil 213 240 - -
Mtr1g4346 1044 MobiDBLite consensus disorder prediction 66 93 - -
Mtr1g4346 1044 Gene3D Cupin 631 1014 - -
Mtr1g4346 1044 ProSiteProfiles JmjC domain profile. 764 1005 IPR003347 -
Mtr1g4346 1044 Coils Coil 573 593 - -
Mtr1g4346 1044 MobiDBLite consensus disorder prediction 111 137 - -
Mtr1g4346 1044 SUPERFAMILY Clavaminate synthase-like 643 1019 - -
Mtr1g4346 1044 MobiDBLite consensus disorder prediction 231 252 - -
Mtr1g4346 1044 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 123 1032 IPR045109 GO:0032454|GO:0033169
Mtr1g4346 1044 Pfam JmjC domain, hydroxylase 894 988 IPR003347 -
Mtr1g4346 1044 PANTHER - 123 1032 - -
Mtr1g4346 1044 ProSiteProfiles Zinc finger RING-type profile. 327 373 IPR001841 -
Mtr1g4346 1044 MobiDBLite consensus disorder prediction 219 271 - -
Mtr1g4346 1044 SMART cupin_9 745 1005 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4346 Mtr-Chr1 55187133 55196602 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g4346 JmjC 7.9e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4346 K15601 - gmx:100780803 1124