Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4345 ATGGCGGAGGAAGAGAACAACCACACAGTCACTTATATAGTGAAAATCAAAGTCACACTCACCCTCCCTGATTCAGATGAACCCATTCCTGATCATGATCATCAAGAAACACAACCTACTGCCAATGTTGGCGCGGAAACGGTACCGTTGGAGGATGGTGACGTGGCACAAGCTGTCGGTGTTGGAGCTGAAACGGCGTCGTTGAAGGATGATGAACGTGATGACGTGGTGGAAGCAGCTGAAGAATCTATTCCTGATCGAGAAAAACAAGCCATGAATGTTGGCGCCAAAACGGTGGTGTCGCTGTTGAAGGACGATGAAGGTTCGGTTGAAGGTGATGACATTGCAGCTAGGGATTCATTCTCCGCTAAAGCTGCGGCGGCGATAATGAAATGCGGCAGAAAGAAAAAGAAACGTGGAAGAAAGAGTTTTGCAGAAATTGAAAAGAGGAAGAGGGATGAAGAAGCGTTGTTAGGGAACAGAACAAAGGAAGAAGCTGGTGAAGGTGATAATGATGCCGGCGGCTCTTCATCATTTCAACCGGTGAGAAAGAGACGCGGCAGAAAGAGAAAGGTGGAGAAGGAAACCACCAAAAATGAGGTTCCACAAGTCCTCAAGAAACTTAAAATCAGGGAGAGTAATGCTAAGTGGATTGAAGAGGGATCCTTAATGTGTCATCAATGTCAGAGAAACGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAGAAGATATTGCATACCTTGTTTAAACAATTGGTATCCTAAACTGAAAGAGAGTGATATTGCCAAGGCATGTCCTGTGTGCTGTGATAATTGCAATTGCAAAGCATGCTTGCGGTCTTTTAAACTCATCGATGAAATGAAGCGTAAGGCTGAAACCATCAACGAGGAGGAGGTTGAGTTCTCTAAGTATCTGCTGAAAGGACTTCTTCCACATTTAAGACGGTTGGATGCAGAACAAATGATTGAGAAGGAAAGAGAAGCCAAGAGACGAGGGCTCTCACTCTCAAAGCTAAATATAAAACCGGCGGATTATTCTAAAGATGAGCGTGTGTTCTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTTCAAAATGCTCTTTTGACCTTTGTCTCCTCTGTTGCTGCGAGCTCCGTGGTGGGAAGCTTCTAGGTGGTGCAGATCCAATTAAGCTTGGGTATGATTTCCGAGGTCGCGATTATCTACATGGTGGAAATGAAGAAAAACATGTTAAAGAAAGTTTATCACATGCAGAGGATGAATCTACGACTCGTGAGTGGTCAAGATCTGGGTGGCATGCAAATGTCGATGGTAGCATTCCTTGTCCAAAAGCTGATAATGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCTGAGTTAGTTTGTAAAGCAAACAAACTTGCAGAAACAATCAAGCTTCAAGATGTAGAGGAGACTCGTGATAATAGGTGTTCTTGCTCGAAACCTGTTAGGCACGCCGATGATATACACAATAACAAAAGGAAGGCAGCTTTTCATGAAGATACAGGTGACAAATTTTTATACTGTCCAAGGGCTGTAGATCTACACCATGGAGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGCACATCTGGTTTAAGCTGGGAACCACTAGTCATGTGGCGTGCATTCCGTCAAATAACCAACTCCAAATACGATGTAGTTTTGGATGTGAAGGCAGTTAATTGCTTAGATTGGTGTGAGGGAGATATTAATATCCACCAATTCTTCACTGGGTACACAAATGGTCGCAGCGATTGGCTTAAATGGCCTGAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCTGAGTTCATATCTTCCTTGCCTTATAAAGAATACACAAATCCTTTTAGTGGTTCTCTCAACCTTGCTGTGAAGTTGCCGGATTATTGTGTAAAGCCTGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAGAATCTCGGACGCGGTGATTCTGTGACTAAGCTCCATTGTGATGTGTCTGATGCAGTAAATGTGTTGACTCATATCGCTAAAGTGGAACTAAAACCTGAGGAAATTAGTGTCATTAAGAAATTGACGCGTAAGCACCTTGAGCAAGATAAGAGGGAGCTACATGGTGATGGGGAGGCGGTTGATATGTTTCACCAACTCTCTGACACTAATGATGATGACCTGATGGTTGGAGAGGATCCCTTAGAAGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGTACCCAAATTGAAGGAATATCTAGAGAAGCATTTCAGAGAGTTCAGACATGTCAATTGCATTCCTTTAAAGCAGGTTATTGACCCCATTCATGATCAGACCATTTATCTGACTATGGAGCATAAGATGAAACTTAAGAAAGAGTATGGAATTGAGCCTTGGACTTTTATTCAGAAGTTGGGAGATGCCGTTTTCATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATATTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAGCTTCCGATAAATCACAGATCCGCCGCAGACAAGTTTGAGGTGAAGAAAATTGCCGTACATGCTATGCTTGATGTGGTTGAAAAATTAGAGAAAGCAAGGTCTGGGAAAACCAAGGTTTGTGCGTAA 2802 0.4304 MAEEENNHTVTYIVKIKVTLTLPDSDEPIPDHDHQETQPTANVGAETVPLEDGDVAQAVGVGAETASLKDDERDDVVEAAEESIPDREKQAMNVGAKTVVSLLKDDEGSVEGDDIAARDSFSAKAAAAIMKCGRKKKKRGRKSFAEIEKRKRDEEALLGNRTKEEAGEGDNDAGGSSSFQPVRKRRGRKRKVEKETTKNEVPQVLKKLKIRESNAKWIEEGSLMCHQCQRNDKGRVVRCTKCKRRRYCIPCLNNWYPKLKESDIAKACPVCCDNCNCKACLRSFKLIDEMKRKAETINEEEVEFSKYLLKGLLPHLRRLDAEQMIEKEREAKRRGLSLSKLNIKPADYSKDERVFCDNCKTSIFDYHRSCSKCSFDLCLLCCCELRGGKLLGGADPIKLGYDFRGRDYLHGGNEEKHVKESLSHAEDESTTREWSRSGWHANVDGSIPCPKADNECDHGFLELRRILPPNCISELVCKANKLAETIKLQDVEETRDNRCSCSKPVRHADDIHNNKRKAAFHEDTGDKFLYCPRAVDLHHGDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITNSKYDVVLDVKAVNCLDWCEGDINIHQFFTGYTNGRSDWLKWPEVLKLKDWPPSDLFQELLPRHHAEFISSLPYKEYTNPFSGSLNLAVKLPDYCVKPDMGPRTYIAYGFAQNLGRGDSVTKLHCDVSDAVNVLTHIAKVELKPEEISVIKKLTRKHLEQDKRELHGDGEAVDMFHQLSDTNDDDLMVGEDPLEGALWDIFRREDVPKLKEYLEKHFREFRHVNCIPLKQVIDPIHDQTIYLTMEHKMKLKKEYGIEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEEFRKLPINHRSAADKFEVKKIAVHAMLDVVEKLEKARSGKTKVCA* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4345 933 SMART cupin_9 643 891 IPR003347 -
Mtr1g4345 933 SUPERFAMILY Clavaminate synthase-like 537 915 - -
Mtr1g4345 933 Pfam JmjC domain, hydroxylase 778 874 IPR003347 -
Mtr1g4345 933 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Mtr1g4345 933 ProSiteProfiles JmjC domain profile. 662 891 IPR003347 -
Mtr1g4345 933 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 89 924 IPR045109 GO:0032454|GO:0033169
Mtr1g4345 933 MobiDBLite consensus disorder prediction 155 198 - -
Mtr1g4345 933 MobiDBLite consensus disorder prediction 155 170 - -
Mtr1g4345 933 Gene3D Cupin 528 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4345 Mtr-Chr1 55162785 55173527 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr1g4345 JmjC 2.2e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4345 K15601 - gmx:100780803 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4345 1 55162785 55173527 Mtr1g4345 1 55162785 55173527 ECH