Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4312 ATGATGGAATTTGATTATTTAGAGAAAACTGTACAAAATTCTGATGATAGAGTTCATAGTCGAAACTCGAAGAATGACGATGATGATGATGACGATGATGTTGATCATTGGTTCAAGCATTCAAAATCTAAGGGCAATGGGGATAGGAAGAGAGATAGGGATAGAAGGAATCGAGGGAGTGAAAGTGAACGAGAGAAGGAGCGCTCTCAGCGAAGGCATGATAGCAGAGATAGAGATAGAGAAATCAGACGGCATAAAGAAAAAAAGGAAGAAGCAGCAGAACCTGAGTCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGATAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTACGATGTCATGTCTGTCCCCATGGCAATAGCGCTTTCAGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATCTGGTTCAGTCTACAGCATCTGTTGTTAACGGGCCTTCTGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGTAATCTGCATTCCAGTATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGATGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAAAGCTTGAATAGCCAGTTGGAGATTGGTGGGAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAATTCGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGATTGTCCTTGAATGCCTCTTCCCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGCATTGCATCAAGTATGGTTGGTTTGCTGGGAAATTCTGTTGTCAACAATACAGGCCTTAATCTGCAAGCAATGGGAAGCATACCGGCAGTAGCTCTTATTCCCGCCCCAGGAGTTGGAATGCCAGGTGGAGGTCTCCAAATTCCAATGCTGACAAGTCCTACTATTGATACAATTGGCACTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGGAAGATGAGAAGGAACCAGACTTTGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAACTTAAAACATATATATGTTGATAAGAGGAGTGCCGGATTTGTCTACCTACGATTTGAAAATACCCAACCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCAGGGAAAATGATCACTGCAAGCTTTATGGTGCCCCAGTTATATGAGGATCGATTCCCAGACAGCAAATGA 1449 0.4306 MMEFDYLEKTVQNSDDRVHSRNSKNDDDDDDDDVDHWFKHSKSKGNGDRKRDRDRRNRGSESEREKERSQRRHDSRDRDREIRRHKEKKEEAAEPESDPERDQRTVFAYQISLKADDRDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVVNGPSGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQMPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQKLDRSGIASSMVGLLGNSVVNNTGLNLQAMGSIPAVALIPAPGVGMPGGGLQIPMLTSPTIDTIGTPSECLLLKNMFDPEDEKEPDFDLDVKEDVEAECSKFGNLKHIYVDKRSAGFVYLRFENTQPAISAQRALHGRWFAGKMITASFMVPQLYEDRFPDSK* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4312 482 SMART rrm1_1 389 467 IPR000504 GO:0003723
Mtr1g4312 482 SMART rrm1_1 105 177 IPR000504 GO:0003723
Mtr1g4312 482 SMART rrm1_1 209 281 IPR000504 GO:0003723
Mtr1g4312 482 MobiDBLite consensus disorder prediction 34 103 - -
Mtr1g4312 482 SMART rrm2_1 389 467 IPR003954 GO:0003676
Mtr1g4312 482 SMART rrm2_1 209 281 IPR003954 GO:0003676
Mtr1g4312 482 CDD RRM1_RBM39_like 105 177 - -
Mtr1g4312 482 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 27 478 - -
Mtr1g4312 482 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 3 77 - -
Mtr1g4312 482 CDD RRM3_RBM39_like 387 469 - -
Mtr1g4312 482 Gene3D - 383 482 IPR012677 -
Mtr1g4312 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 471 IPR000504 GO:0003723
Mtr1g4312 482 SUPERFAMILY RNA-binding domain, RBD 208 471 IPR035979 GO:0003676
Mtr1g4312 482 SUPERFAMILY RNA-binding domain, RBD 96 206 IPR035979 GO:0003676
Mtr1g4312 482 MobiDBLite consensus disorder prediction 1 26 - -
Mtr1g4312 482 PANTHER CC1-LIKE SPLICING FACTOR 27 478 - -
Mtr1g4312 482 PANTHER CC1-LIKE SPLICING FACTOR 3 77 - -
Mtr1g4312 482 Gene3D - 203 310 IPR012677 -
Mtr1g4312 482 Gene3D - 8 190 IPR012677 -
Mtr1g4312 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Mtr1g4312 482 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 300 406 IPR029123 -
Mtr1g4312 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 173 IPR000504 GO:0003723
Mtr1g4312 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 411 464 IPR000504 GO:0003723
Mtr1g4312 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 279 IPR000504 GO:0003723
Mtr1g4312 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Mtr1g4312 482 MobiDBLite consensus disorder prediction 1 103 - -
Mtr1g4312 482 TIGRFAM SF-CC1: splicing factor, CC1-like family 13 480 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4312 Mtr-Chr1 54781178 54790057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4312 105 271 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 5.55e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4312 K13091 - gmx:100789839 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4312 1 54781178 54790057 Mtr1g4312 1 54781178 54790057 ECH