Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4309 ATGAGTCGTCGTCATTCATGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGATAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATCATCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCATCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACACATAAACCCTTGATCAATAATGAATCTCTTCTTGTAAAGGAAGAGAAGGAAAAACCATCAATGATAATGCCACTGTCTCAACCTCAACCTCAAAGAACTTTAATGCTAGAATCCTCACATGAATATTCAGAAGCACTTCTAATGAATAAGCCAACATTTGATCTTGATCCATTGCAATTACAATTTGAACTGAACCAATTTGGAACCAATTCAAGCTATTTCTTCTCTTCAGACAACATCAGCAACAACTCATTTTCCAACATGATTAATGAAAATACAGCAGGTGGGTTAATCTCATGGGAAGGTGAAAATTAA 693 0.3593 MSRRHSCSLKQKLRKGLWSPEEDDKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSKQEEDLIINLHEALGNRWAQIASQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPLINNESLLVKEEKEKPSMIMPLSQPQPQRTLMLESSHEYSEALLMNKPTFDLDPLQLQFELNQFGTNSSYFFSSDNISNNSFSNMINENTAGGLISWEGEN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4309 230 PANTHER MYB DOMAIN PROTEIN 55 3 186 - -
Mtr1g4309 230 CDD SANT 71 113 IPR001005 -
Mtr1g4309 230 CDD SANT 18 62 IPR001005 -
Mtr1g4309 230 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Mtr1g4309 230 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr1g4309 230 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr1g4309 230 SMART sant 14 64 IPR001005 -
Mtr1g4309 230 SMART sant 67 115 IPR001005 -
Mtr1g4309 230 PANTHER MYB-RELATED PROTEIN HV33-LIKE 3 186 - -
Mtr1g4309 230 Gene3D - 12 68 - -
Mtr1g4309 230 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Mtr1g4309 230 Gene3D - 70 145 - -
Mtr1g4309 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mtr1g4309 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Mtr1g4309 230 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4309 Mtr-Chr1 54754425 54755430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4309 3 134 MYB Transcription Factor Family AT1G57560 78.030 4.30e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g4309 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4309 K09422 - cpap:110810129 271.552