Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4303 ATGAACAATTTCATCATGCAAAACATTACTGAAAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACTGTGTCTACTGGAAATTAAGTGAAGATCAAAGGTATCTTGAATGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGTGGAGAAGAACATCTTTTCCCTGTCTCTTCATGTAGGGATACAATGTTTTCACACCCAAGAACAAACTCTTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCTATAGATTCAGGGATTCATGCACAGACTCTATTAACTAACCAACCCAATTGGTTGAACTATCCCAATAGCTTGGATCCAAACACATTACATGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTGGTTGAGCTCTTTGTAACTAAACAGGTTGGTGAAGATCAAAATGTAATAGATTTTATCACATCTCAATGCATTGTCATGGTGGATCAAGAGGGGATGAACCACTCAATTGGCTTCAATTCAATGAGCAACATGCAATCAAATGTAGGAGATGAAAATGATAACACAAACAATATTTTCCATCCATCAGAGACATTGAATCTTCCACATGACATCTCTGTATTGAACTTCATGCAACAGTTCAATTACAGTTACAATCAACAACAAAACCGAATCAAGAACGATGGAACCTTCTCTGAAGAATACCTAGGTCCATTCCTTCATGATCACGAAAACAACAACACTCTCAAATCCAACACAGAAGAGGAACATGATAGCAAAAGCTTGATGACAGAAAATAATCAATATGTGTTTGTGGATCCTTTAGACACAAAAAAGAAGCAAGAAAATGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGATCAAAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGAAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCTGAGAGAAAAAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATCTCAAAGCTTGATAGAGCTTCTATTCTTGGTGATGCTATTGAATTTGTGAAGGATTTGCAGAAGCAAGTGAAGGAACTTCAAGATGAACTTGAGGAAAATTCAGAAACAGGAACTGAAAGTAACTGCGTATATGTTGATGGTGTTCAAGTTAAAGCAAATAATAATAACAATGTTACAAAAGCAGAACATGGTTTTCATGTTGGGAATGGCTATGTATCAAAACAAAAGCAGGAAGATGTTGGTACTGTTGTTACTGACAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGTAATGAGTACTTTGTGAAGGTGTTTTGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGATGCTTTCAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACCAGTCATAAGGGTCTTGTCTCAAATGTTTTTAAAGTTGAGAAAAAGGAGAGTGAGATAGTTGAGGCTGAAGAAGTTAGAGATTCACTACTAGAGCTGACACGGAACAAATCGGAATCATAA 1566 0.378 MNNFIMQNITERLRPLVGLNGWDYCVYWKLSEDQRYLEWLGCCCGGSESNQNGGEEHLFPVSSCRDTMFSHPRTNSCDLLSQLSTSIPIDSGIHAQTLLTNQPNWLNYPNSLDPNTLHETINGTHVLIPVPGGLVELFVTKQVGEDQNVIDFITSQCIVMVDQEGMNHSIGFNSMSNMQSNVGDENDNTNNIFHPSETLNLPHDISVLNFMQQFNYSYNQQQNRIKNDGTFSEEYLGPFLHDHENNNTLKSNTEEEHDSKSLMTENNQYVFVDPLDTKKKQENVVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSETGTESNCVYVDGVQVKANNNNNVTKAEHGFHVGNGYVSKQKQEDVGTVVTDKQTQQMEAQVEVAQIDGNEYFVKVFCEHRPGGFVKLMDAFNTLGMDVMHATVTSHKGLVSNVFKVEKKESEIVEAEEVRDSLLELTRNKSES* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4303 521 CDD bHLH_AtAMS_like 316 385 - -
Mtr1g4303 521 MobiDBLite consensus disorder prediction 240 263 - -
Mtr1g4303 521 MobiDBLite consensus disorder prediction 247 262 - -
Mtr1g4303 521 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 91 519 - -
Mtr1g4303 521 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 91 519 - -
Mtr1g4303 521 SMART finulus 319 368 IPR011598 GO:0046983
Mtr1g4303 521 MobiDBLite consensus disorder prediction 280 324 - -
Mtr1g4303 521 Coils Coil 352 379 - -
Mtr1g4303 521 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 155 IPR025610 -
Mtr1g4303 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Mtr1g4303 521 Pfam Helix-loop-helix DNA-binding domain 320 363 IPR011598 GO:0046983
Mtr1g4303 521 Gene3D - 302 378 IPR036638 GO:0046983
Mtr1g4303 521 Coils Coil 494 514 - -
Mtr1g4303 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 378 IPR036638 GO:0046983
Mtr1g4303 521 ProSiteProfiles ACT domain profile. 450 521 IPR002912 -
Mtr1g4303 521 CDD ACT_UUR-ACR-like 451 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4303 Mtr-Chr1 54718702 54722106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4303 6 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 49.723 9.97e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g4303 bHLH-MYC_N 3.9e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4303 - - aprc:113871920 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4303 1 54718702 54722106 Mtr1g4303 1 54718702 54722106 ECH