Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4293 ATGAGTAGTAGTTGTGGAAGAGAAGGAGGAGGAGGAGCAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCATCGTTGCTTTGTTCATGCTATTCAAACCCTTGGAGGTCATCATAAGGCTACTCCTAAACTTGTTCTTCAGTTGATGGATATCAAAGGACTCACTATTTCACATGTCAAGAGCCATCTTCAGATGTATAGAAGCATGAGAGGTGAATTAGGAAGACAAGGTAGGACAAGCTCCCAACATAGAAACCAATGTCTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTAATGTTGAGCATTCTTTGAGGAGAGATTCTGATTCTTCATTCATTGGTCACAGTAACAACTTCTCAAAAAGAGCTAGAATCGAGAGGAGAAGTTCTACAACTAGTCTGCAATGCAGCAGTGAAAGAAGAAGAATATGTGATGATGCGGTAACAAAACCGTACTGCTTTTATGACTATGTACAGCTCAATGCCAATGCCAATACCAATACCAATACCAATACCATGGGTGATCAGCATGATCTGCAGCTGCTGCAGAACAAGAAAGGAATAAAGGATGAACAACAGTTTTATGCATGGCAGAGGCAGATTCAACCACCCAATTCAACTTTGCTACCAGATTTTGGCATAAACCTCACTTCCTTCAAATCTCTTAACCAAGAATCTGATTTCTCTCAGGCTAGTAATGTAAATGACAGAAAGAGCCCTTCATGGTCAATTAATGGAGTTGTGAAAACTGACAGAGCACATGTAGAAGGAGGACATGAGTTGTCATTGTCGTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGCTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGTCCTAACCCCAGCTACAACTACAAGGACTGCTCTAGAATATCATCTACTGTCAATGAAAGGATTAATTTAGACCTATCTTTAGCCATTTGTGGCAATTGA 1005 0.403 MSSSCGREGGGGAVRQYIRSKVPRLRWTPELHRCFVHAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRSMRGELGRQGRTSSQHRNQCLEEHDDGCVDEVNDVNVEHSLRRDSDSSFIGHSNNFSKRARIERRSSTTSLQCSSERRRICDDAVTKPYCFYDYVQLNANANTNTNTNTMGDQHDLQLLQNKKGIKDEQQFYAWQRQIQPPNSTLLPDFGINLTSFKSLNQESDFSQASNVNDRKSPSWSINGVVKTDRAHVEGGHELSLSLTLQNPSPQTSNASYSASEISEAISCPNPSYNYKDCSRISSTVNERINLDLSLAICGN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4293 334 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 334 - -
Mtr1g4293 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 334 IPR044848 GO:0003700
Mtr1g4293 334 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Mtr1g4293 334 SUPERFAMILY Homeodomain-like 21 76 IPR009057 -
Mtr1g4293 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 76 IPR006447 GO:0003677
Mtr1g4293 334 Gene3D - 22 78 - -
Mtr1g4293 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4293 Mtr-Chr1 54580486 54584013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4293 5 81 G2-like Transcription Factor Family AT1G14600 72.152 5.69e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr1g4293 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4293 - - mtr:MTR_1g112370 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4293 1 54580486 54584013 Mtr1g4293 1 54580486 54584013 ECH