Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4284 ATGGCTACATCATCTTCCTCAGCATCACTTTTTGGATTCAGAGAAGAGGATCCGAATCCGATGAATCAACAGCAGCATTCTTTGCCACCGTCTTCATCAACTGCAACTCCAGCTGCTGCACCAGCTCCGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAATCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAACCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTTCATCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAATATAGGTGTGACTGTGGCACTCTCTTCTCCAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATTTCTCTGACTGGTGCCATTGGATCCCATCTCTATGGAAGCTCAAGCAACAACAACACCATGGGTCTAAGCATAGCCCAGGTAGCTGCACAAATGCCCAACATGCAACAACAAGACCACCACAGCAGCAATTCAGCCACTGAAATCTTGAGACTCGGCGCAGCCGCCGCCAATCGGTCCGGGCAATTCGACCATCACATGCTCCCCCAGGCTACTTTCAGACCTAATTCCTTCTTCAACAACAACATTCATGAGCCAAACCAAAACTTTGTCCCTCATGATCCTTCTCAACAACAAGGTTTAATGATGCAGAATAGCCACAATAGCAACAACAGCAATCTCTTCAACATGCCGAATTTCCTTTCAAGTAACAGTACTAACAGTAGCAACAACTCATTCTCTGAACACTTGAATGTGAATAATGAAGGAACAAATTTCTTCAATGGATCAGGTGGAACAAGTAGTGCTCCATCACTCTTCAGCAATGTTTTCTCCCAAGGAGGAAACAGTAACATTAATGCTGCTGCTGGTACTGCTATATCATCAATGTCAGCAACTGCACTTCTTCAGAAAGCTGCTCAAATGGGTGCAACTTCAAGTAATGGAAATGGCACTACTGCGACTTCGCTTCTCAAAAGCTTTGGAAACAATACTGGTGCAAGTAACTCAACTTCTTCTGGTGGCGGTGATCATAGCAGAGTGCAAATGGGTGGTGGAAGTGGGAACTATGGTTTTGGTGGTGGGAATCATGAACAGAGTAATTTGCAGGATTTGATGAACTCTTTCGCTGCTACAGGAAATACTTCAATATTTGATCAAAGTGGAGGAGGAGGAGGAGGGGGTGTAGGGCTTGGAAGAGGAGGTGGTGATAGTAGTCAGCTGACTCGTGACTTTTTAGGAGTTGGTCATGAGATTGTGAGAAGCATGAGTGGTGTTGTTGGAGGACAAAGGGATCAACATGCAGCTGCTTTTAACTTGGCAGCTTCTTTGGAAGGAGATCAGAGAAATAATATCAATGCTGCACAATCATTTGGTGGAGGAAGAGGAGGTGCTGGTGGTGGAGGAGGAGCAGGAGCAAATTTTCATTGA 1716 0.4522 MATSSSSASLFGFREEDPNPMNQQQHSLPPSSSTATPAAAPAPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPISLTGAIGSHLYGSSSNNNTMGLSIAQVAAQMPNMQQQDHHSSNSATEILRLGAAAANRSGQFDHHMLPQATFRPNSFFNNNIHEPNQNFVPHDPSQQQGLMMQNSHNSNNSNLFNMPNFLSSNSTNSSNNSFSEHLNVNNEGTNFFNGSGGTSSAPSLFSNVFSQGGNSNINAAAGTAISSMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGASNSTSSGGGDHSRVQMGGGSGNYGFGGGNHEQSNLQDLMNSFAATGNTSIFDQSGGGGGGGVGLGRGGGDSSQLTRDFLGVGHEIVRSMSGVVGGQRDQHAAAFNLAASLEGDQRNNINAAQSFGGGRGGAGGGGGAGANFH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4284 571 MobiDBLite consensus disorder prediction 552 571 - -
Mtr1g4284 571 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Mtr1g4284 571 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Mtr1g4284 571 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 521 - -
Mtr1g4284 571 MobiDBLite consensus disorder prediction 1 38 - -
Mtr1g4284 571 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 521 - -
Mtr1g4284 571 Gene3D Classic Zinc Finger 52 121 - -
Mtr1g4284 571 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Mtr1g4284 571 SMART c2h2final6 114 144 IPR013087 -
Mtr1g4284 571 SMART c2h2final6 149 169 IPR013087 -
Mtr1g4284 571 SMART c2h2final6 73 95 IPR013087 -
Mtr1g4284 571 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Mtr1g4284 571 Gene3D Classic Zinc Finger 127 203 - -
Mtr1g4284 571 MobiDBLite consensus disorder prediction 1 58 - -
Mtr1g4284 571 MobiDBLite consensus disorder prediction 427 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4284 Mtr-Chr1 54482094 54489649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4284 44 520 IDZ Gene Family AT2G02070 49.907 8.06e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g4284 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4284 K25870 - gmx:100799389 565.459