Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4270 ATGAAAAATATAGAGAGCAAAGATAGAGAGTCTCATGAGACGACCAACATGTTTGGACATACTGCGAGCACAAACCAGTTTGATTTTCTTGAAAGAGTTGCTAAGCAGAAAGAAGAAGAAAGTAAGTTTCTTTCTCTTTTCGGGACCAGCCGGTCTCTTTTTGAGAAGCCTCCTGTGGAGACCAGCACATCTCTTTTTGAGAAGCCTCATATGAGAACCAGCCCATTTCTTTTTGGGAAGCCTCCTGTGACGACAAGCCCGTCTCTTTTTGAGAAGCCTCCTGCAACGACTAACTCGTTTCTTTTTGGGAAGCCTCTTGTGACGACAAGCCCGTCTCTTTTTGAGAAGCCTCCTGCAACGACCAGCCCGTTTCTTTTTGGGAAGCCTCCTGCGACGACAAGTCCGTCTCTTTTTGAGAAGCCTCCTGCAACAACTAGCTCGTTTCTTTTTGGGAAGCCTCCTGTGACGACAAGCCCGTCTCTTTTTGAGAAGCCTCCTGCAACGACTAGCCCATTTCCTTTTGGGAAGCCTCCTGTGACAACAAGCCCGTCTCTTTTTGAGAAGCCTCCTGTGAAGACCAGCCCGTCTCTTTTTGATTTCATGAAGCCTCCTGTGAAGACCAGCCCGTCTCTTTTTGATTTCATTAAGCCTCCTGTGAGGACCAGCTCGTCTCGTTTTGAGAAGCCCGACTCGTTTCTTTTCGAGAAGCTTCCTGTGCACGAAGTGGAAATTACTAAGAAGCAGAAAGTAGAGAGCATAGAGGGAGAGCCTCTTGTGACGACCAACCCGTTACTTGCTGAGAAACCAGAAGTGGAAATTGCTAAGGAGCACCATTCAAATAACAAAAAAGAAATTGCTATGATGAAAAACGTAGAGAGCACATATGGAGAGCCTCATGTGACGATCAATGTGTTTGCTGCTAAGAATGAAGAAGTAGAAAAAGTTGCTGAGATGAAGAACGTAGAGCGCACAAATGGAAAGCCTCATGTGACGATCAACTTGTTTCTTGCTAAGAGGCAAAAAGTAGAGATAGAGAGCACTGAGGGAGAGGATCCTCATGTTACGATCAACGTATTTCCTTCTAAGAATGAAGAAGTAGAAATTGCTAAGCAGCAAAAAGTAGAGAGCATAGAGGGAGAGTCTCTTGTGACGACCAAACCGTTTGTTGCTGAGAAACAAGAAGTAGAAAAAGTTCTTTCTGTAATGGAGGATGCCAAAAATGCCCTACAGTCGTCAAAGAAAAGGGCTGCTGAACGGGAGCTCACTCGAGACACTCCTCTTGACGATGAGGAAGATGACACTGACCTTGAAGCTGGAACTTTCAAAAAAGCCAGTGACGAGGTTCTGGCAACCAAAAGAATAATCAAAGTATCACGTCGCCAACAGAATAATTCTGATCCTTCTTCAAACCCTGTCGCTGGAATACGCTTGGCTGCTCCCACTGTACCCACTGCCCAGCCTGGTGAAGAAGTTGCTAATGCGATGTCTTGGGGTGCCAGCGTACGTCCAGAACATCAGGACAGTCTCTTTAAACAATGGGGTGCCAGCGTACGTCCAGAACATCATGACGGTCCTTTTAAACAGGGTACGGTGTCTTGGGGTGACAGCGTACATCCAAAACATCATGCCAATACCATTAATGAATGGGGTAGGGTGTATTGGGATGGCAGCAAACAGCAATCTCATTAA 1689 0.4594 MKNIESKDRESHETTNMFGHTASTNQFDFLERVAKQKEEESKFLSLFGTSRSLFEKPPVETSTSLFEKPHMRTSPFLFGKPPVTTSPSLFEKPPATTNSFLFGKPLVTTSPSLFEKPPATTSPFLFGKPPATTSPSLFEKPPATTSSFLFGKPPVTTSPSLFEKPPATTSPFPFGKPPVTTSPSLFEKPPVKTSPSLFDFMKPPVKTSPSLFDFIKPPVRTSSSRFEKPDSFLFEKLPVHEVEITKKQKVESIEGEPLVTTNPLLAEKPEVEIAKEHHSNNKKEIAMMKNVESTYGEPHVTINVFAAKNEEVEKVAEMKNVERTNGKPHVTINLFLAKRQKVEIESTEGEDPHVTINVFPSKNEEVEIAKQQKVESIEGESLVTTKPFVAEKQEVEKVLSVMEDAKNALQSSKKRAAERELTRDTPLDDEEDDTDLEAGTFKKASDEVLATKRIIKVSRRQQNNSDPSSNPVAGIRLAAPTVPTAQPGEEVANAMSWGASVRPEHQDSLFKQWGASVRPEHHDGPFKQGTVSWGDSVHPKHHANTINEWGRVYWDGSKQQSH* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4270 562 MobiDBLite consensus disorder prediction 519 538 - -
Mtr1g4270 562 Pfam NUP50 (Nucleoporin 50 kDa) 414 469 IPR015007 GO:0005643
Mtr1g4270 562 MobiDBLite consensus disorder prediction 1 15 - -
Mtr1g4270 562 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g4270 562 MobiDBLite consensus disorder prediction 409 424 - -
Mtr1g4270 562 MobiDBLite consensus disorder prediction 409 440 - -
Mtr1g4270 562 PANTHER RAN BINDING PROTEIN 402 490 IPR045255 -
Mtr1g4270 562 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATED 402 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4270 Mtr-Chr1 54364946 54369093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4270 73 224 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT1G62970 30.921 7.98e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4270 - K15304 mtr:MTR_1g112060 530.02