Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4246 ATGCTTCCTATGAGCTGCATTCTTTTAATGTCCCTCTTGTGTTCTTTCTTACCCCAAATCAAAGCTTTCTCCAACCTCACCTTACCCCACCAACATCCTTACCCTGAGGCTGTGGTTCACGAACTTCATCAGAAAATCAATGTGTCATTTTCAAGAAGGGAACTCCTCTCAAAAGATCAAGGTGCTTGTTTAACTGGAAACCCGGTAGACGATTGCTGGCGATGCGACCCAAACTGGTCCGCAAACCGTCAGAAATTAGCGGAATGCGGAATTGGTTTCGGTCGCGCCGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTAACAGATTCCTCCGACAACGACCCAGCAAATCCAGTTCCAGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATAATCTTCTCCTCTTCCATGACAATAAACCTCCGTCACGAACTCATCTTCAATTCTTACAAAACCGTCGACGGTCGCGGCGCAAATGTTCAAATCACCGGCCACGGTTGCATCACACTCCAATACATCTCAAACGTAATAATCCACAATATCCATGTTCATCACTGTAGACCCTCGGGGAATACTAACATACGTGCGAGTCCAACGCATGTAGGATTCAGAGGCATATCGGACGGTGACGGAATATCAATCTTCGGTTCACGTAACATCTGGATCGACCATTGCTCGTTATCTTATTGCACCGACGGTTTAATAGATGCTATAATGGGGTCCACTGCAATAACAATTTCGAATAATCATTTTGGTCATCACGATGAAGTTATGCTTTTAGGTCATAATGATAAATACACTCCAGATAGAGGAATGCAAGTAACAATAGCGTTTAATCACTTTGGTGAAGGACTTGTTCAAAGAATGCCACGTTGTAGACTTGGTTATATTCATGTTGTTAACAATGATTTTACACAGTGGGAAATGTATGCTATCGGAGGTAGTGCTAATCCTACTATTAACAGTCAGGGTAACCGTTACACAGCTCCTTCCGATGCAAATGCTAAAGAGGTGACAAAGCGCGTGGATACAGATGATAAAGAATGGAGTGGTTGGAATTGGAGGACGGAGGGGGATATAATGGTAAATGGAGCGTTCTTTGTACCGTCAGGGGTGGGGATGAGTGCTCAGTATGCGGAGGCGTCAAGTGTACAGCCAAAATCCGTGGAGCAAATTAACCAGCTTACAATGTACTCTGGTGTATTCGGTGATCCCAGGGATAATGGGGATATATATCCCGGGTTCAACGGTGGTGGGACCACGACAGGAGCCAACAGCAAGGGTTACAATGGGAATGGGGGGTCCAGCAATGACGATGGGGACTTCTTTGGTATGATATTCAAAGGTACCAGCAGCCAAGCAGCACCGCTAGTACCCTACTCATCTATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCAATTTGGACATTATCACCAACTATGATATTTTATTATCATTACTATGA 1491 0.4433 MLPMSCILLMSLLCSFLPQIKAFSNLTLPHQHPYPEAVVHELHQKINVSFSRRELLSKDQGACLTGNPVDDCWRCDPNWSANRQKLAECGIGFGRAAMGGKGGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIIFSSSMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCRPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFGHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDANAKEVTKRVDTDDKEWSGWNWRTEGDIMVNGAFFVPSGVGMSAQYAEASSVQPKSVEQINQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGANSKGYNGNGGSSNDDGDFFGMIFKGTSSQAAPLVPYSSIVFVSTFLSLLIIFNLDIITNYDILLSLL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4246 496 Pfam Pectate lyase 149 330 IPR002022 -
Mtr1g4246 496 PANTHER PECTATE LYASE 5 428 - -
Mtr1g4246 496 PANTHER PECTATE LYASE 18-RELATED 5 428 IPR045032 GO:0030570
Mtr1g4246 496 Gene3D - 66 408 IPR012334 -
Mtr1g4246 496 SUPERFAMILY Pectin lyase-like 67 387 IPR011050 -
Mtr1g4246 496 SMART amb_all 141 338 IPR002022 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Mtr1g4246 496 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4246 Mtr-Chr1 54109856 54116447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4246 1 481 Polysaccharide Lyase AT3G53190 62.500 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4246 K01728 - gmx:100808438 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4246 1 54109856 54116447 Mtr1g4246 1 54109856 54116447 ECH
Mtr1g4246 1 54109856 54116447 Mtr4g3735 4 51084807 51087077 ECH
Mtr1g4246 1 54109856 54116447 Mtr3g2391 3 37777507 37780146 ECH