Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4239 ATGGCTACCCAAATGAGCAAAAAGAGAAAGGTTGTTGCTGATGGAGTTTTGAACGCTGAAATGCACGAGTTTCTGAGCCGTGTACTCGCTGAAGATGGTTACTCCGGTGTTGAGATTAGGGTTACCCCTATTCGCACCGAGATCATCATCAAAGCTACTCGTACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGAGAGCTAACCACATTGATTCATAAGAGGTTTAACTTTCCTGAGAACAGTGTCCAACTTTATGCTGAAAAGGTCAGCAATAGAGGACTTTGTGCTGCTGCTCAAGCTGAATCTCTTCGTTACAAGCTCCTTGGTGGTCTTGCCGTCCGCAGGGCCTGCTATGGTGTTTTGAGGTTTGTTATGGAAAGTGGTGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAATTGAGGGCTCAAAGAGCTAAATCAATGAAGTTCAAGCATGGAGACATGCTTTCTTCTGGGCAGCCAGTGAAAGATTACATTGATTCTGCAGTTAGACATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAAGTGAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAAGGTCCTAAAACTCCCCTCCCTGATATTGTCACTATCCACACTCCAAAGGAGGAGGAGGTATACAACCGCCCCGCCACTATTTTGCCCACCACCAATATTGAGGTGCCTATTGTTGCTTAA 714 0.4594 MATQMSKKRKVVADGVLNAEMHEFLSRVLAEDGYSGVEIRVTPIRTEIIIKATRTQAVLGEKGRRIRELTTLIHKRFNFPENSVQLYAEKVSNRGLCAAAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKHGDMLSSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEVYNRPATILPTTNIEVPIVA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4239 237 CDD 40S_S3_KH 15 95 - -
Mtr1g4239 237 Pfam KH domain 20 93 IPR004044 GO:0003723
Mtr1g4239 237 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Mtr1g4239 237 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Mtr1g4239 237 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 225 - -
Mtr1g4239 237 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 225 - -
Mtr1g4239 237 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Mtr1g4239 237 Gene3D - 93 220 IPR036419 -
Mtr1g4239 237 Gene3D - 1 92 IPR015946 -
Mtr1g4239 237 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 13 98 IPR009019 GO:0003723
Mtr1g4239 237 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Mtr1g4239 237 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4239 Mtr-Chr1 54034026 54036647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4239 1 226 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 82.301 3.47e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4239 K02985 - gmx:100795045 405.216