Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4238 ATGTCTGGAAAAGAAGAAAATCGAATATTTGTTGGTGGATTGGGTTGGGACGTTACGGAACGTCAGCTTGAACATGCTTTTGATCGTTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGGGATACAGGACGTCCACGTGGATTTGGGTTTATTACATTTTCAGACCGTCGGGGAATGGAGGATGCAATCAAAGAAATGGATGGACGGGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCAGGATGGGGGGTGATGATGCAGACCAACGTTACAGAGGTGGTTTTTCTTCTGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGATGGTGGTCGTGGTCGGGGTGGTGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGGGATCGCCTTGGTGAACGTGAGCGATACATTGATGATCGTTATGACGGAGGACGTTATGGGGATAGGGATCGTTTAGACAACCGAGACTACAAGTATAGTGGCCGTGATCGCTATGCTAGTGACAGGTATACAACTAGTGGAGATCGATCTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCGCAAAATGGTTATGGGAAGGAAAGAGGCTATGACCGAAACGGTGGTGCGCGTGGAGTTGCTGATAGATATGGAAGCGGAATGCCAGCTCGTGATGAAGGAAGGAGTTATAGGGGTAGACCTGGTCCTTATGACCGCCCAAGCAGGGCTGCTCGTCCACCTTCATTTGACCGCTACTGA 831 0.5018 MSGKEENRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIKEMDGREIGDRIISVNKAQPRMGGDDADQRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGGGSFSSRPRFGGDRLGERERYIDDRYDGGRYGDRDRLDNRDYKYSGRDRYASDRYTTSGDRSASDRYGSGSDYPQNGYGKERGYDRNGGARGVADRYGSGMPARDEGRSYRGRPGPYDRPSRAARPPSFDRY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4238 276 MobiDBLite consensus disorder prediction 135 160 - -
Mtr1g4238 276 PANTHER TRANSFORMER-2-RELATED 1 239 - -
Mtr1g4238 276 MobiDBLite consensus disorder prediction 84 110 - -
Mtr1g4238 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mtr1g4238 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mtr1g4238 276 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Mtr1g4238 276 MobiDBLite consensus disorder prediction 200 215 - -
Mtr1g4238 276 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
Mtr1g4238 276 Gene3D - 115 143 - -
Mtr1g4238 276 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 239 - -
Mtr1g4238 276 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Mtr1g4238 276 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mtr1g4238 276 MobiDBLite consensus disorder prediction 193 276 - -
Mtr1g4238 276 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Mtr1g4238 276 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Mtr1g4238 276 Gene3D - 2 114 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4238 Mtr-Chr1 54023958 54029158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4238 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 3.40e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4238 - - gmx:100809519 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4238 1 54023958 54029158 Mtr1g4238 1 54023958 54029158 ECH